Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AMD33_RS08905 Genome accession   NZ_CP012588
Coordinates   1692682..1693455 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687682..1698455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS08885 (AMD33_08855) - 1687810..1689234 (+) 1425 WP_014727280.1 CHAP domain-containing protein -
  AMD33_RS08890 (AMD33_08860) - 1689448..1690413 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  AMD33_RS10740 - 1690462..1691307 (-) 846 Protein_1699 transposase -
  AMD33_RS08900 (AMD33_08870) - 1691520..1692695 (+) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  AMD33_RS08905 (AMD33_08875) recO 1692682..1693455 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  AMD33_RS08910 (AMD33_08880) plsX 1693672..1694676 (+) 1005 WP_014727281.1 phosphate acyltransferase PlsX -
  AMD33_RS08915 (AMD33_08885) - 1694676..1694921 (+) 246 WP_014727282.1 phosphopantetheine-binding protein -
  AMD33_RS08920 (AMD33_08890) purC 1695206..1695913 (+) 708 WP_014727283.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=134841 AMD33_RS08905 WP_002946256.1 1692682..1693455(+) (recO) [Streptococcus thermophilus strain MN-BM-A01]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=134841 AMD33_RS08905 WP_002946256.1 1692682..1693455(+) (recO) [Streptococcus thermophilus strain MN-BM-A01]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607