Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG48_RS16585 Genome accession   NZ_CP010170
Coordinates   3157947..3158576 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain H6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152947..3163576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG48_RS16570 (RG48_15800) helD 3153189..3155243 (-) 2055 WP_001515148.1 DNA helicase IV -
  RG48_RS16575 (RG48_15805) yccF 3155366..3155812 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RG48_RS16580 (RG48_15810) yccS 3155822..3157984 (+) 2163 WP_000875061.1 YccS family putative transporter -
  RG48_RS16585 (RG48_15815) sxy/tfoX 3157947..3158576 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG48_RS16590 (RG48_15820) sulA 3158795..3159304 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG48_RS16600 (RG48_15830) ompA 3159661..3160701 (+) 1041 WP_000750416.1 porin OmpA -
  RG48_RS16605 (RG48_15835) matP 3160777..3161229 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG48_RS16610 (RG48_15840) ycbZ 3161415..3163175 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134777 RG48_RS16585 WP_000839153.1 3157947..3158576(-) (sxy/tfoX) [Escherichia coli strain H6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134777 RG48_RS16585 WP_000839153.1 3157947..3158576(-) (sxy/tfoX) [Escherichia coli strain H6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment