Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG44_RS22300 Genome accession   NZ_CP010160
Coordinates   4163693..4164322 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain H1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4158693..4169322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG44_RS22275 (RG44_20635) ycbZ 4159094..4160854 (-) 1761 WP_073544980.1 Lon protease family protein -
  RG44_RS22280 (RG44_20640) matP 4161040..4161492 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG44_RS22285 (RG44_20645) ompA 4161568..4162608 (-) 1041 WP_000750416.1 porin OmpA -
  RG44_RS22295 (RG44_20655) sulA 4162965..4163474 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG44_RS22300 (RG44_20660) sxy/tfoX 4163693..4164322 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG44_RS22305 (RG44_20665) yccS 4164285..4166447 (-) 2163 WP_000875061.1 YccS family putative transporter -
  RG44_RS22310 (RG44_20670) yccF 4166457..4166903 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RG44_RS22315 (RG44_20675) helD 4167026..4169080 (+) 2055 WP_073544981.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134693 RG44_RS22300 WP_000839153.1 4163693..4164322(+) (sxy/tfoX) [Escherichia coli strain H1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134693 RG44_RS22300 WP_000839153.1 4163693..4164322(+) (sxy/tfoX) [Escherichia coli strain H1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATACAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment