Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG41_RS11655 Genome accession   NZ_CP010151
Coordinates   2224016..2224645 (-) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli strain D8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2219016..2229645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG41_RS11640 (RG41_10990) helD 2219258..2221312 (-) 2055 WP_001350178.1 DNA helicase IV -
  RG41_RS11645 (RG41_10995) yccF 2221435..2221881 (+) 447 WP_001261236.1 YccF domain-containing protein -
  RG41_RS11650 (RG41_11000) yccS 2221891..2224053 (+) 2163 WP_000875041.1 YccS family putative transporter -
  RG41_RS11655 (RG41_11005) sxy/tfoX 2224016..2224645 (-) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG41_RS11660 (RG41_11010) sulA 2224864..2225373 (+) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  RG41_RS11670 (RG41_11020) ompA 2225729..2226769 (+) 1041 WP_001350588.1 porin OmpA -
  RG41_RS11675 (RG41_11025) matP 2226847..2227299 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  RG41_RS11680 (RG41_11030) ycbZ 2227485..2229245 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=134616 RG41_RS11655 WP_000839144.1 2224016..2224645(-) (sxy/tfoX) [Escherichia coli strain D8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134616 RG41_RS11655 WP_000839144.1 2224016..2224645(-) (sxy/tfoX) [Escherichia coli strain D8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment