Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG38_RS01725 Genome accession   NZ_CP010145
Coordinates   329852..330481 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain D5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 324852..335481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG38_RS01700 (RG38_01620) ycbZ 325242..327002 (-) 1761 WP_000156526.1 Lon protease family protein -
  RG38_RS01705 (RG38_01625) matP 327188..327640 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  RG38_RS01710 (RG38_01630) ompA 327715..328767 (-) 1053 WP_000750419.1 porin OmpA -
  RG38_RS01720 (RG38_01640) sulA 329124..329633 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG38_RS01725 (RG38_01645) sxy/tfoX 329852..330481 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG38_RS01730 (RG38_01650) yccS 330444..332606 (-) 2163 WP_000875044.1 YccS family putative transporter -
  RG38_RS01735 (RG38_01655) yccF 332616..333062 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RG38_RS01740 (RG38_01660) helD 333185..335239 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134561 RG38_RS01725 WP_000839153.1 329852..330481(+) (sxy/tfoX) [Escherichia coli strain D5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134561 RG38_RS01725 WP_000839153.1 329852..330481(+) (sxy/tfoX) [Escherichia coli strain D5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment