Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG37_RS07560 Genome accession   NZ_CP010143
Coordinates   1452023..1452652 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain D4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447023..1457652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG37_RS07535 (RG37_07085) ycbZ 1447424..1449184 (-) 1761 WP_000156518.1 Lon protease family protein -
  RG37_RS07540 (RG37_07090) matP 1449370..1449822 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG37_RS07545 (RG37_07095) ompA 1449898..1450938 (-) 1041 WP_001400178.1 porin OmpA -
  RG37_RS07555 (RG37_07105) sulA 1451295..1451804 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG37_RS07560 (RG37_07110) sxy/tfoX 1452023..1452652 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG37_RS07565 (RG37_07115) yccS 1452615..1454777 (-) 2163 WP_000875061.1 YccS family putative transporter -
  RG37_RS07570 (RG37_07120) yccF 1454787..1455233 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RG37_RS07575 (RG37_07125) helD 1455356..1457410 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134542 RG37_RS07560 WP_000839153.1 1452023..1452652(+) (sxy/tfoX) [Escherichia coli strain D4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134542 RG37_RS07560 WP_000839153.1 1452023..1452652(+) (sxy/tfoX) [Escherichia coli strain D4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment