Detailed information NTG0134507

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A6704_RS06930
• Genome accession: NZ_CP012584
• Coordinates: 1478811..1479815 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA_D25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1473811..1484815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6704_RS06900 (A6704_06900)	fghA	1473903..1474754 (+)	852	WP_069376588.1	S-formylglutathione hydrolase	-
A6704_RS06905 (A6704_06905)	ispF	1474825..1475298 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A6704_RS06910 (A6704_06910)	truD	1475295..1476362 (+)	1068	WP_069376589.1	tRNA pseudouridine(13) synthase TruD	-
A6704_RS06915 (A6704_06915)	surE	1476350..1477099 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
A6704_RS06920 (A6704_06920)	-	1477132..1477767 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A6704_RS06925 (A6704_06925)	-	1477813..1478706 (+)	894	WP_069376590.1	peptidoglycan DD-metalloendopeptidase family protein	-
A6704_RS06930 (A6704_06930)	rpoS	1478811..1479815 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
A6704_RS06935 (A6704_06935)	fdxA	1480242..1480565 (-)	324	WP_003092272.1	ferredoxin FdxA	-
A6704_RS06940 (A6704_06940)	mutS	1480632..1483172 (-)	2541	WP_014603975.1	DNA mismatch repair protein MutS	-
A6704_RS06950 (A6704_06950)	-	1483240..1484402 (+)	1163	WP_087920907.1	IS3-like element IS222 family transposase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=134507 A6704_RS06930 WP_003113871.1 1478811..1479815(+) (rpoS) [Pseudomonas aeruginosa strain PA_D25]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=134507 A6704_RS06930 WP_003113871.1 1478811..1479815(+) (rpoS) [Pseudomonas aeruginosa strain PA_D25]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653