Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG34_RS03490 Genome accession   NZ_CP010134
Coordinates   645410..646039 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain D1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 640410..651039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG34_RS03475 (RG34_03275) helD 640652..642706 (-) 2055 WP_000420533.1 DNA helicase IV -
  RG34_RS03480 (RG34_03280) - 642829..643275 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG34_RS03485 (RG34_03285) yccS 643285..645447 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RG34_RS03490 (RG34_03290) sxy/tfoX 645410..646039 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG34_RS03495 (RG34_03295) sulA 646258..646767 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG34_RS03505 (RG34_03305) ompA 647124..648164 (+) 1041 WP_000750416.1 porin OmpA -
  RG34_RS03510 (RG34_03310) matP 648240..648692 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG34_RS03515 (RG34_03315) - 648878..650638 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134471 RG34_RS03490 WP_000839153.1 645410..646039(-) (sxy/tfoX) [Escherichia coli strain D1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134471 RG34_RS03490 WP_000839153.1 645410..646039(-) (sxy/tfoX) [Escherichia coli strain D1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment