Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG30_RS07755 Genome accession   NZ_CP010125
Coordinates   1525012..1525641 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520012..1530641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG30_RS07730 (RG30_07320) ycbZ 1520413..1522173 (-) 1761 WP_000156526.1 Lon protease family protein -
  RG30_RS07735 (RG30_07325) matP 1522359..1522811 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG30_RS07740 (RG30_07330) ompA 1522887..1523927 (-) 1041 WP_000750416.1 porin OmpA -
  RG30_RS07750 (RG30_07340) sulA 1524284..1524793 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG30_RS07755 (RG30_07345) sxy/tfoX 1525012..1525641 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG30_RS07760 (RG30_07350) yccS 1525604..1527766 (-) 2163 WP_000875023.1 YccS family putative transporter -
  RG30_RS07765 (RG30_07355) yccF 1527776..1528222 (-) 447 WP_073533514.1 YccF domain-containing protein -
  RG30_RS07770 (RG30_07360) helD 1528345..1530399 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134385 RG30_RS07755 WP_000839153.1 1525012..1525641(+) (sxy/tfoX) [Escherichia coli strain C8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134385 RG30_RS07755 WP_000839153.1 1525012..1525641(+) (sxy/tfoX) [Escherichia coli strain C8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment