Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG28_RS19545 Genome accession   NZ_CP010122
Coordinates   3664869..3665498 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659869..3670498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG28_RS19530 (RG28_18660) helD 3660111..3662165 (-) 2055 WP_000420533.1 DNA helicase IV -
  RG28_RS19535 (RG28_18665) yccF 3662288..3662734 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG28_RS19540 (RG28_18670) yccS 3662744..3664906 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RG28_RS19545 (RG28_18675) sxy/tfoX 3664869..3665498 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG28_RS19550 (RG28_18680) sulA 3665717..3666226 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG28_RS19560 (RG28_18690) ompA 3666583..3667623 (+) 1041 WP_000750416.1 porin OmpA -
  RG28_RS19565 (RG28_18695) matP 3667699..3668151 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG28_RS19570 (RG28_18700) ycbZ 3668337..3670097 (+) 1761 WP_073521099.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134373 RG28_RS19545 WP_000839153.1 3664869..3665498(-) (sxy/tfoX) [Escherichia coli strain C5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134373 RG28_RS19545 WP_000839153.1 3664869..3665498(-) (sxy/tfoX) [Escherichia coli strain C5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment