Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RC72_RS11175 Genome accession   NZ_CP010116
Coordinates   2251879..2252508 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2246879..2257508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC72_RS11150 (RC72_10645) ycbZ 2247269..2249029 (-) 1761 WP_000156479.1 Lon protease family protein -
  RC72_RS11155 (RC72_10650) matP 2249215..2249667 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RC72_RS11160 (RC72_10655) ompA 2249742..2250794 (-) 1053 WP_000750418.1 porin OmpA -
  RC72_RS11170 (RC72_10665) sulA 2251151..2251660 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  RC72_RS11175 (RC72_10670) sxy/tfoX 2251879..2252508 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RC72_RS11180 (RC72_10675) yccS 2252471..2254633 (-) 2163 WP_001550920.1 YccS family putative transporter -
  RC72_RS11185 (RC72_10680) yccF 2254643..2255089 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RC72_RS11190 (RC72_10685) helD 2255212..2257266 (+) 2055 WP_021561301.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134281 RC72_RS11175 WP_000839153.1 2251879..2252508(+) (sxy/tfoX) [Escherichia coli strain C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134281 RC72_RS11175 WP_000839153.1 2251879..2252508(+) (sxy/tfoX) [Escherichia coli strain C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment