Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NF53_RS20485 Genome accession   NZ_CP010106
Coordinates   4055711..4056169 (+) Length   152 a.a.
NCBI ID   WP_000804862.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar indiana strain HD521     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4050711..4061169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF53_RS20470 (NF53_3979) - 4051381..4051617 (+) 237 WP_000283738.1 hypothetical protein -
  NF53_RS20475 (NF53_3980) - 4051778..4053886 (-) 2109 WP_000421677.1 polyphosphate kinase -
  NF53_RS20480 (NF53_3981) - 4053995..4055569 (-) 1575 WP_003318198.1 Ppx/GppA family phosphatase -
  NF53_RS20485 (NF53_3982) kre 4055711..4056169 (+) 459 WP_000804862.1 YkyB family protein Regulator
  NF53_RS20490 (NF53_3983) - 4056201..4056863 (-) 663 WP_000922482.1 YkyA family protein -
  NF53_RS20495 (NF53_3984) - 4057478..4058131 (-) 654 WP_000680811.1 diguanylate cyclase -
  NF53_RS20500 (NF53_3985) - 4058295..4058528 (+) 234 WP_000939448.1 SPP1 phage holin family protein -
  NF53_RS20505 (NF53_3986) - 4058560..4059060 (-) 501 WP_000708117.1 hypothetical protein -
  NF53_RS20510 (NF53_3987) - 4059473..4061014 (+) 1542 WP_000449901.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=134234 NF53_RS20485 WP_000804862.1 4055711..4056169(+) (kre) [Bacillus thuringiensis serovar indiana strain HD521]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTIQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=134234 NF53_RS20485 WP_000804862.1 4055711..4056169(+) (kre) [Bacillus thuringiensis serovar indiana strain HD521]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTGGCAAAAAAAACAATTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment