Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NF53_RS06440 Genome accession   NZ_CP010106
Coordinates   1243856..1244179 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis serovar indiana strain HD521     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238856..1249179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF53_RS06410 (NF53_1165) - 1238932..1239159 (+) 228 WP_000251856.1 hypothetical protein -
  NF53_RS06415 (NF53_1166) - 1239311..1240597 (+) 1287 WP_000248741.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NF53_RS06420 (NF53_1167) sipW 1240788..1241357 (+) 570 WP_000767792.1 signal peptidase I SipW -
  NF53_RS06425 (NF53_1168) - 1241418..1242005 (+) 588 WP_000172854.1 CalY family protein -
  NF53_RS06430 (NF53_1169) - 1242125..1242802 (+) 678 WP_050821728.1 DUF4047 domain-containing protein -
  NF53_RS06435 (NF53_1170) calY 1243190..1243783 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  NF53_RS06440 (NF53_1171) sinR 1243856..1244179 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  NF53_RS06445 (NF53_1172) - 1244259..1244393 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  NF53_RS06450 (NF53_1173) inhA1 1244736..1247126 (+) 2391 WP_001035945.1 M6 family metalloprotease immune inhibitor InhA1 -
  NF53_RS06455 (NF53_1174) - 1247298..1248665 (+) 1368 WP_000028380.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=134223 NF53_RS06440 WP_000578885.1 1243856..1244179(-) (sinR) [Bacillus thuringiensis serovar indiana strain HD521]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=134223 NF53_RS06440 WP_000578885.1 1243856..1244179(-) (sinR) [Bacillus thuringiensis serovar indiana strain HD521]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment