Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BG06_RS03070 Genome accession   NZ_CP010088
Coordinates   513959..514246 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus thuringiensis strain 97-27     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 508959..519246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG06_RS03040 (BG06_513) - 509275..509622 (+) 348 WP_000426313.1 DUF4257 domain-containing protein -
  BG06_RS03045 (BG06_514) - 509707..509931 (+) 225 WP_000162601.1 hypothetical protein -
  BG06_RS03050 (BG06_515) - 510119..511294 (-) 1176 WP_000832288.1 MFS transporter -
  BG06_RS03055 (BG06_516) - 511343..512278 (-) 936 WP_000877935.1 aldo/keto reductase -
  BG06_RS03060 (BG06_517) - 512385..512693 (+) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  BG06_RS03065 (BG06_518) - 512734..513684 (-) 951 WP_001089043.1 serine protease -
  BG06_RS03070 (BG06_519) abrB 513959..514246 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BG06_RS03075 (BG06_520) - 514363..516243 (-) 1881 WP_001025959.1 FtsX-like permease family protein -
  BG06_RS03080 (BG06_521) nadE 516515..517333 (+) 819 WP_000174877.1 ammonia-dependent NAD(+) synthetase -
  BG06_RS03085 (BG06_522) - 517380..517841 (-) 462 WP_000035009.1 NUDIX hydrolase -
  BG06_RS03090 (BG06_523) - 517873..518070 (-) 198 WP_001048094.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=134095 BG06_RS03070 WP_000648331.1 513959..514246(-) (abrB) [Bacillus thuringiensis strain 97-27]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=134095 BG06_RS03070 WP_000648331.1 513959..514246(-) (abrB) [Bacillus thuringiensis strain 97-27]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment