Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QR42_RS14390 Genome accession   NZ_CP010075
Coordinates   2828538..2829179 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus sp. WP8     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823538..2834179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS14355 (QR42_14355) - 2824662..2825093 (+) 432 WP_039181111.1 Na(+)/H(+) antiporter subunit B -
  QR42_RS14360 (QR42_14360) - 2825093..2825434 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  QR42_RS14365 (QR42_14365) - 2825427..2826905 (+) 1479 WP_039181114.1 Na+/H+ antiporter subunit D -
  QR42_RS14370 (QR42_14370) - 2826912..2827391 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  QR42_RS14375 (QR42_14375) - 2827391..2827672 (+) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  QR42_RS14380 (QR42_14380) mnhG 2827656..2828030 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  QR42_RS14385 (QR42_14385) - 2828125..2828514 (-) 390 WP_039181120.1 hotdog fold thioesterase -
  QR42_RS14390 (QR42_14390) comA 2828538..2829179 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  QR42_RS14395 (QR42_14395) comP 2829260..2831566 (-) 2307 WP_039181123.1 ATP-binding protein Regulator
  QR42_RS14400 (QR42_14400) comX 2831580..2831750 (-) 171 WP_034317154.1 competence pheromone ComX -
  QR42_RS14405 (QR42_14405) - 2831728..2832651 (-) 924 WP_039181129.1 polyprenyl synthetase family protein -
  QR42_RS14410 (QR42_14410) degQ 2832803..2832943 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QR42_RS14415 (QR42_14415) - 2833449..2833805 (+) 357 WP_039181132.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=134063 QR42_RS14390 WP_024423322.1 2828538..2829179(-) (comA) [Bacillus sp. WP8]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=134063 QR42_RS14390 WP_024423322.1 2828538..2829179(-) (comA) [Bacillus sp. WP8]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAAGCGCAGCAGACTGACCACGATCTCTTAACGGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment