Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QR42_RS09960 Genome accession   NZ_CP010075
Coordinates   2015502..2016137 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010502..2021137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS09920 (QR42_09920) - 2010660..2011778 (+) 1119 WP_235354763.1 NADH-dependent flavin oxidoreductase -
  QR42_RS09925 (QR42_09925) - 2011832..2012338 (-) 507 WP_039183169.1 PTS glucose transporter subunit IIA -
  QR42_RS09930 (QR42_09930) - 2012508..2012927 (+) 420 WP_039179459.1 Hsp20/alpha crystallin family protein -
  QR42_RS09935 (QR42_09935) - 2012948..2013400 (-) 453 WP_039179462.1 YppG family protein -
  QR42_RS09940 (QR42_09940) - 2013509..2013889 (-) 381 WP_235354764.1 YppE family protein -
  QR42_RS09945 (QR42_09945) - 2013939..2014172 (-) 234 WP_224928722.1 DUF5446 family protein -
  QR42_RS09950 (QR42_09950) sspM 2014370..2014474 (+) 105 WP_039179471.1 acid-soluble spore protein SspM -
  QR42_RS09955 (QR42_09955) - 2014499..2015455 (-) 957 WP_039179474.1 DUF2515 domain-containing protein -
  QR42_RS09960 (QR42_09960) recU 2015502..2016137 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  QR42_RS09965 (QR42_09965) - 2016157..2018859 (+) 2703 WP_039179479.1 PBP1A family penicillin-binding protein -
  QR42_RS09970 (QR42_09970) - 2018896..2019405 (-) 510 WP_039179482.1 hypothetical protein -
  QR42_RS09975 (QR42_09975) nth 2019402..2020064 (-) 663 WP_024422776.1 endonuclease III -
  QR42_RS09980 (QR42_09980) - 2020082..2020786 (-) 705 WP_039179485.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=134048 QR42_RS09960 WP_034280474.1 2015502..2016137(+) (recU) [Bacillus sp. WP8]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=134048 QR42_RS09960 WP_034280474.1 2015502..2016137(+) (recU) [Bacillus sp. WP8]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATATTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment