Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QR42_RS08600 Genome accession   NZ_CP010075
Coordinates   1743643..1744023 (+) Length   126 a.a.
NCBI ID   WP_228280000.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1738643..1749023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS08590 (QR42_08590) - 1739137..1742280 (+) 3144 WP_039178894.1 cytochrome P450 -
  QR42_RS08595 (QR42_08595) - 1742475..1743383 (+) 909 WP_039178896.1 trypsin-like serine protease -
  QR42_RS08600 (QR42_08600) nucA/comI 1743643..1744023 (+) 381 WP_228280000.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QR42_RS08605 (QR42_08605) - 1744171..1745019 (+) 849 WP_039178899.1 STAS domain-containing protein -
  QR42_RS08610 (QR42_08610) - 1745052..1745594 (-) 543 WP_039178902.1 IseA DL-endopeptidase inhibitor family protein -
  QR42_RS08615 (QR42_08615) - 1745891..1746337 (+) 447 WP_039178904.1 hypothetical protein -
  QR42_RS08620 (QR42_08620) lexA 1746383..1747003 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  QR42_RS08625 (QR42_08625) yneA 1747163..1747474 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  QR42_RS08630 (QR42_08630) - 1747492..1748139 (+) 648 WP_039178908.1 recombinase family protein -
  QR42_RS08635 (QR42_08635) - 1748209..1748439 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13757.50 Da        Isoelectric Point: 8.5068

>NTDB_id=134047 QR42_RS08600 WP_228280000.1 1743643..1744023(+) (nucA/comI) [Bacillus sp. WP8]
MGMLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=134047 QR42_RS08600 WP_228280000.1 1743643..1744023(+) (nucA/comI) [Bacillus sp. WP8]
ATGGGCATGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACA
GGAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGGATACCGACAAAACCTGGATTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.349

100

0.563

Multiple sequence alignment