Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QR42_RS06865 Genome accession   NZ_CP010075
Coordinates   1389339..1389617 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus sp. WP8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384339..1394617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS06845 (QR42_06845) - 1384435..1384710 (-) 276 WP_039178200.1 hypothetical protein -
  QR42_RS06850 (QR42_06850) - 1384854..1386473 (+) 1620 WP_039178203.1 ATP-binding cassette domain-containing protein -
  QR42_RS06855 (QR42_06855) - 1386509..1387741 (-) 1233 WP_039178206.1 aminopeptidase -
  QR42_RS19320 - 1387849..1387980 (-) 132 WP_003210922.1 protein YkpC -
  QR42_RS06860 (QR42_06860) mreBH 1388055..1389062 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  QR42_RS06865 (QR42_06865) abrB 1389339..1389617 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QR42_RS06870 (QR42_06870) - 1389764..1391074 (+) 1311 WP_039178209.1 ATP-binding protein -
  QR42_RS06875 (QR42_06875) - 1391079..1391915 (+) 837 WP_039178212.1 gamma-glutamylcyclotransferase family protein -
  QR42_RS06880 (QR42_06880) - 1391953..1392621 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  QR42_RS06885 (QR42_06885) ade 1392884..1394614 (+) 1731 WP_039178214.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=134042 QR42_RS06865 WP_017359400.1 1389339..1389617(+) (abrB) [Bacillus sp. WP8]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=134042 QR42_RS06865 WP_017359400.1 1389339..1389617(+) (abrB) [Bacillus sp. WP8]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAACCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment