Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QR42_RS06760 Genome accession   NZ_CP010075
Coordinates   1369387..1369959 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364387..1374959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS06730 (QR42_06730) dapD 1364514..1365224 (+) 711 WP_039178160.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QR42_RS06735 (QR42_06735) - 1365306..1366436 (+) 1131 WP_039178162.1 N-acetyldiaminopimelate deacetylase -
  QR42_RS06740 (QR42_06740) - 1366487..1366729 (+) 243 WP_024424725.1 YkuS family protein -
  QR42_RS06745 (QR42_06745) - 1366752..1367561 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  QR42_RS06750 (QR42_06750) ahpA 1367833..1368375 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  QR42_RS06755 (QR42_06755) - 1368458..1368916 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  QR42_RS06760 (QR42_06760) rok 1369387..1369959 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  QR42_RS06765 (QR42_06765) - 1370007..1370924 (-) 918 WP_039178167.1 hypothetical protein -
  QR42_RS06770 (QR42_06770) - 1371009..1371590 (+) 582 WP_039178170.1 molybdenum cofactor guanylyltransferase -
  QR42_RS06775 (QR42_06775) - 1371622..1372638 (+) 1017 WP_039178172.1 thiazole biosynthesis adenylyltransferase ThiF -
  QR42_RS06780 (QR42_06780) glp 1372648..1373925 (+) 1278 WP_039178175.1 gephyrin-like molybdotransferase Glp -
  QR42_RS06785 (QR42_06785) mobB 1373907..1374431 (+) 525 WP_039183079.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  QR42_RS06790 (QR42_06790) - 1374428..1374919 (+) 492 WP_039178177.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=134041 QR42_RS06760 WP_024426871.1 1369387..1369959(+) (rok) [Bacillus sp. WP8]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=134041 QR42_RS06760 WP_024426871.1 1369387..1369959(+) (rok) [Bacillus sp. WP8]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGCGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAAAGAAAGACAGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCAAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8

Multiple sequence alignment