Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QR42_RS06640 Genome accession   NZ_CP010075
Coordinates   1349593..1350054 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344593..1355054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS06620 (QR42_06620) - 1345198..1346082 (+) 885 WP_039178125.1 cation diffusion facilitator family transporter -
  QR42_RS19450 - 1346147..1346299 (-) 153 WP_180272403.1 hypothetical protein -
  QR42_RS06625 (QR42_06625) - 1346601..1347140 (+) 540 WP_039178127.1 RDD family protein -
  QR42_RS06630 (QR42_06630) - 1347264..1348574 (+) 1311 WP_039178128.1 MFS transporter -
  QR42_RS06635 (QR42_06635) - 1348648..1349556 (+) 909 WP_024424709.1 chemotaxis protein -
  QR42_RS06640 (QR42_06640) kre 1349593..1350054 (-) 462 WP_008356877.1 YkyB family protein Regulator
  QR42_RS19455 - 1350289..1350465 (+) 177 WP_180272404.1 hypothetical protein -
  QR42_RS06645 (QR42_06645) - 1350558..1351475 (-) 918 WP_039178130.1 helix-turn-helix domain-containing protein -
  QR42_RS06650 (QR42_06650) - 1351589..1352485 (+) 897 WP_039178132.1 EamA family transporter -
  QR42_RS06655 (QR42_06655) - 1352667..1352882 (-) 216 WP_039178134.1 hypothetical protein -
  QR42_RS06660 (QR42_06660) - 1353078..1354355 (-) 1278 WP_039178137.1 MFS transporter -
  QR42_RS06665 (QR42_06665) - 1354429..1354926 (-) 498 WP_039178139.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=134040 QR42_RS06640 WP_008356877.1 1349593..1350054(-) (kre) [Bacillus sp. WP8]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=134040 QR42_RS06640 WP_008356877.1 1349593..1350054(-) (kre) [Bacillus sp. WP8]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCAAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment