Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   QR42_RS06470 Genome accession   NZ_CP010075
Coordinates   1312178..1314280 (-) Length   700 a.a.
NCBI ID   WP_039178078.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307178..1319280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS06445 (QR42_06445) - 1307590..1307832 (+) 243 WP_039178071.1 aspartyl-phosphate phosphatase Spo0E family protein -
  QR42_RS06450 (QR42_06450) - 1307879..1309384 (-) 1506 WP_039178073.1 ATP-binding protein -
  QR42_RS06455 (QR42_06455) - 1309589..1310044 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  QR42_RS06460 (QR42_06460) motB 1310241..1311011 (-) 771 WP_039178076.1 flagellar motor protein MotB -
  QR42_RS06465 (QR42_06465) motA 1311004..1311798 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  QR42_RS06470 (QR42_06470) clpC 1312178..1314280 (-) 2103 WP_039178078.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QR42_RS06475 (QR42_06475) - 1314525..1315568 (+) 1044 WP_039178079.1 membrane protein -
  QR42_RS06480 (QR42_06480) queC 1315843..1316499 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  QR42_RS06485 (QR42_06485) queD 1316500..1316940 (+) 441 WP_024424684.1 6-carboxytetrahydropterin synthase QueD -
  QR42_RS06490 (QR42_06490) queE 1316933..1317664 (+) 732 WP_039178081.1 7-carboxy-7-deazaguanine synthase QueE -
  QR42_RS06495 (QR42_06495) queF 1317680..1318177 (+) 498 WP_039178083.1 preQ(1) synthase -
  QR42_RS06505 (QR42_06505) - 1318632..1318850 (+) 219 WP_039178087.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77945.53 Da        Isoelectric Point: 5.0302

>NTDB_id=134039 QR42_RS06470 WP_039178078.1 1312178..1314280(-) (clpC) [Bacillus sp. WP8]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQQAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTPDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTDKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQDEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=134039 QR42_RS06470 WP_039178078.1 1312178..1314280(-) (clpC) [Bacillus sp. WP8]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGCAGGCAGGTCATGCCCCAAACATGGAGCAGCCAAAACAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGCTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCAC
TGAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTGCAAAGCCGTAAAAATATCATCTT
GTTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGTTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGACGCTTCCAGCCCGTTATCGTGGATGAGCCAACACCAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCCATCAAAGCGTGCGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATCTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAGGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGACGAAGAAGAAGCGATAGAAGCAAGACTTCAAAACAAAACAACTGACAAAGAGCATATCGTCACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGATGTCCGTCTAAAAGCACGAGTAATTGGGCAGGAGCATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCGACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACACTGGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACACGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCTTACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTTCAAA
TCATGGAAGATGGCCGCTTAACAGACAGTCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAGGACGAAGCGATTGAGGAACAATCACTCATTGA
TTCGCTCAGCAGCTACTTCAAACCAGAATTTTTGAACCGCTTTGACAGCATTATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAACAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGATCAAATGACAGAAATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

AAA lid domain (AAA_lid_9)

(254-353)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.714

0.517
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.538

92.857

0.441
  clpC Streptococcus thermophilus LMD-9

46.285

92.286

0.427
  clpC Streptococcus thermophilus LMG 18311

46.13

92.286

0.426
  clpC Streptococcus mutans UA159

44.479

93.143

0.414
  clpC Streptococcus pneumoniae TIGR4

44.136

92.571

0.409
  clpC Streptococcus pneumoniae Rx1

44.323

91.857

0.407
  clpC Streptococcus pneumoniae D39

44.323

91.857

0.407

Multiple sequence alignment