Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QR42_RS00250 Genome accession   NZ_CP010075
Coordinates   47223..47513 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42223..52513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS00210 (QR42_00210) - 42255..42584 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  QR42_RS00215 (QR42_00215) - 42597..43037 (+) 441 WP_039175878.1 YaaR family protein -
  QR42_RS00220 (QR42_00220) holB 43049..44038 (+) 990 WP_039175879.1 DNA polymerase III subunit delta' -
  QR42_RS00225 (QR42_00225) - 44041..44868 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  QR42_RS00230 (QR42_00230) yabA 44883..45236 (+) 354 WP_039175883.1 DNA replication initiation control protein YabA -
  QR42_RS00235 (QR42_00235) - 45292..46035 (+) 744 WP_039175886.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QR42_RS00240 (QR42_00240) - 46022..46321 (+) 300 WP_039175889.1 GIY-YIG nuclease family protein -
  QR42_RS00245 (QR42_00245) rsmI 46296..47177 (+) 882 WP_039175891.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QR42_RS00250 (QR42_00250) abrB 47223..47513 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QR42_RS00255 (QR42_00255) metG 48034..50034 (+) 2001 WP_039175894.1 methionine--tRNA ligase -
  QR42_RS00260 (QR42_00260) - 50116..50883 (+) 768 WP_039175897.1 TatD family hydrolase -
  QR42_RS00265 (QR42_00265) - 51128..52330 (+) 1203 WP_039175900.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=134020 QR42_RS00250 WP_087975202.1 47223..47513(-) (abrB) [Bacillus sp. WP8]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=134020 QR42_RS00250 WP_087975202.1 47223..47513(-) (abrB) [Bacillus sp. WP8]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment