Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   PJ19_RS06240 Genome accession   NZ_CP010072
Coordinates   1160028..1160987 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 01-1512     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1140324..1170843 1160028..1160987 within 0


Gene organization within MGE regions


Location: 1140324..1170843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ19_RS06145 (PJ19_06145) pglI 1140324..1141253 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  PJ19_RS06150 (PJ19_06150) pglH 1141246..1142325 (-) 1080 WP_010891911.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  PJ19_RS06155 (PJ19_06155) pglK 1142322..1144016 (-) 1695 WP_002858308.1 ABC-type lipopolysaccharide transporter PglK -
  PJ19_RS06160 (PJ19_06160) galE 1144010..1144996 (-) 987 WP_002852683.1 UDP-glucose 4-epimerase GalE -
  PJ19_RS06165 (PJ19_06165) - 1145054..1145848 (-) 795 WP_002875164.1 3'-5' exonuclease -
  PJ19_RS06170 (PJ19_06170) waaC 1145914..1146942 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  PJ19_RS06175 (PJ19_06175) htrB 1146932..1147819 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  PJ19_RS06180 (PJ19_06180) - 1147816..1149363 (+) 1548 WP_002858148.1 glycosyltransferase -
  PJ19_RS06185 (PJ19_06185) - 1149367..1150539 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  PJ19_RS06190 (PJ19_06190) - 1150523..1151518 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  PJ19_RS06195 (PJ19_06195) - 1151576..1152745 (+) 1170 WP_043012882.1 glycosyltransferase family 2 protein -
  PJ19_RS06200 (PJ19_06200) wlaN 1152734..1153645 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  PJ19_RS06205 (PJ19_06205) cstIII 1153700..1154584 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  PJ19_RS06210 (PJ19_06210) neuB1 1154565..1155596 (+) 1032 WP_002858213.1 sialic acid synthase -
  PJ19_RS06215 (PJ19_06215) neuC 1155593..1156708 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  PJ19_RS10485 (PJ19_06220) - 1156705..1157619 (+) 915 Protein_1201 beta-1,4-N-acetylgalactosaminyltransferase -
  PJ19_RS10490 (PJ19_06225) - 1157653..1158315 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  PJ19_RS06230 (PJ19_06230) - 1158310..1159161 (-) 852 WP_032114306.1 glycosyltransferase -
  PJ19_RS06235 (PJ19_06235) waaV 1159145..1159969 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  PJ19_RS06240 (PJ19_06240) waaF 1160028..1160987 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  PJ19_RS06245 (PJ19_06245) gmhA 1160968..1161528 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  PJ19_RS06250 (PJ19_06250) rfaE1 1161525..1162910 (-) 1386 WP_014516805.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  PJ19_RS06255 (PJ19_06255) rfaD 1162903..1163856 (-) 954 WP_002858041.1 ADP-glyceromanno-heptose 6-epimerase -
  PJ19_RS06260 (PJ19_06260) gmhB 1163857..1164418 (-) 562 Protein_1209 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  PJ19_RS06265 (PJ19_06265) - 1164499..1164801 (+) 303 WP_002852762.1 cytochrome c -
  PJ19_RS06270 (PJ19_06270) ccoS 1164824..1165030 (-) 207 WP_002875422.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  PJ19_RS06275 (PJ19_06275) - 1165027..1167384 (-) 2358 WP_014516806.1 heavy metal translocating P-type ATPase -
  PJ19_RS06280 (PJ19_06280) rho 1167493..1168791 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  PJ19_RS06285 (PJ19_06285) dnaX 1168795..1170324 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -
  PJ19_RS06290 (PJ19_06290) - 1170321..1170548 (-) 228 WP_002868592.1 DUF2165 family protein -
  PJ19_RS06300 (PJ19_06300) - 1170676..1170843 (-) 168 WP_194717490.1 DUF2165 family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=134003 PJ19_RS06240 WP_002875425.1 1160028..1160987(+) (waaF) [Campylobacter jejuni subsp. jejuni strain 01-1512]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=134003 PJ19_RS06240 WP_002875425.1 1160028..1160987(+) (waaF) [Campylobacter jejuni subsp. jejuni strain 01-1512]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment