Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A6681_RS23620 Genome accession   NZ_CP012578
Coordinates   5136341..5137783 (-) Length   480 a.a.
NCBI ID   WP_016852097.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_D2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5131341..5142783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6681_RS23590 (A6681_23590) - 5131667..5132782 (+) 1116 WP_003110035.1 glycosyltransferase family 4 protein -
  A6681_RS23595 (A6681_23595) - 5132775..5133536 (+) 762 WP_069376867.1 DUF2334 domain-containing protein -
  A6681_RS23600 (A6681_23600) - 5133533..5134534 (+) 1002 WP_016852096.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  A6681_RS23605 (A6681_23605) - 5134509..5134721 (-) 213 WP_003101176.1 hypothetical protein -
  A6681_RS23610 (A6681_23610) purU 5134771..5135622 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  A6681_RS23615 (A6681_23615) mvaT 5135882..5136256 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  A6681_RS23620 (A6681_23620) sbcB 5136341..5137783 (-) 1443 WP_016852097.1 exodeoxyribonuclease I Machinery gene
  A6681_RS23625 (A6681_23625) - 5138008..5138745 (+) 738 WP_022579572.1 hypothetical protein -
  A6681_RS23630 (A6681_23630) - 5138783..5139580 (+) 798 WP_003134638.1 RDD family protein -
  A6681_RS23635 (A6681_23635) - 5139577..5140557 (+) 981 WP_003093893.1 stage II sporulation protein M -
  A6681_RS23640 (A6681_23640) - 5140544..5142115 (+) 1572 WP_069376868.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=133970 A6681_RS23620 WP_016852097.1 5136341..5137783(-) (sbcB) [Pseudomonas aeruginosa strain PA_D2]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=133970 A6681_RS23620 WP_016852097.1 5136341..5137783(-) (sbcB) [Pseudomonas aeruginosa strain PA_D2]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCTCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44

Multiple sequence alignment