Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AMR84_RS09905 Genome accession   NZ_CP012503
Coordinates   1985814..1987082 (+) Length   422 a.a.
NCBI ID   WP_000774767.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NGBS357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980814..1992082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR84_RS09870 (AMR84_09880) prmA 1981210..1982163 (-) 954 WP_001099291.1 50S ribosomal protein L11 methyltransferase -
  AMR84_RS09875 (AMR84_09885) - 1982160..1982624 (-) 465 WP_306425658.1 MepB family protein -
  AMR84_RS09880 (AMR84_09890) - 1982742..1983458 (+) 717 WP_000859577.1 MerR family transcriptional regulator -
  AMR84_RS09885 (AMR84_09895) - 1983497..1983967 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  AMR84_RS09890 (AMR84_09900) - 1983939..1984397 (-) 459 WP_000350741.1 NUDIX hydrolase -
  AMR84_RS11930 - 1984384..1984527 (-) 144 Protein_1910 RNA-binding protein -
  AMR84_RS09895 (AMR84_09905) - 1984533..1985003 (-) 471 WP_001051344.1 DUF3013 family protein -
  AMR84_RS09900 (AMR84_09910) - 1985330..1985821 (+) 492 WP_001869680.1 GNAT family N-acetyltransferase -
  AMR84_RS09905 (AMR84_09915) rarA 1985814..1987082 (+) 1269 WP_000774767.1 replication-associated recombination protein A Machinery gene
  AMR84_RS09915 (AMR84_09925) - 1987625..1987930 (-) 306 WP_000511796.1 hypothetical protein -
  AMR84_RS09920 (AMR84_09930) - 1987914..1988315 (-) 402 WP_000517013.1 hypothetical protein -
  AMR84_RS09925 (AMR84_09935) - 1988303..1989520 (-) 1218 WP_000006158.1 Mbeg1-like protein -
  AMR84_RS09930 (AMR84_09940) - 1989557..1989943 (-) 387 WP_000731526.1 DUF1310 family protein -
  AMR84_RS09935 (AMR84_09945) - 1990114..1990623 (-) 510 WP_001869186.1 hypothetical protein -
  AMR84_RS09940 (AMR84_09950) - 1990625..1990957 (-) 333 WP_000792761.1 hypothetical protein -
  AMR84_RS09945 (AMR84_09955) - 1991217..1991627 (-) 411 WP_306341197.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46539.95 Da        Isoelectric Point: 6.6716

>NTDB_id=133902 AMR84_RS09905 WP_000774767.1 1985814..1987082(+) (rarA) [Streptococcus agalactiae strain NGBS357]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDGALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=133902 AMR84_RS09905 WP_000774767.1 1985814..1987082(+) (rarA) [Streptococcus agalactiae strain NGBS357]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTCATTGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGCTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGGGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAACGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAACGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGTGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment