Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   AMM49_RS06690 Genome accession   NZ_CP012480
Coordinates   1317675..1318115 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain NGBS128     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312675..1323115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMM49_RS06675 (AMM49_06660) - 1313333..1313959 (-) 627 WP_000449644.1 GTP pyrophosphokinase -
  AMM49_RS06680 (AMM49_06665) rcrQ 1314067..1315821 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  AMM49_RS06685 (AMM49_06670) rcrP 1315811..1317628 (-) 1818 WP_000481812.1 ABC transporter ATP-binding protein Regulator
  AMM49_RS06690 (AMM49_06675) rcrR 1317675..1318115 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AMM49_RS06695 (AMM49_06680) - 1318384..1320456 (+) 2073 WP_000726928.1 surface-anchored 5'-nucleotidase -
  AMM49_RS06700 (AMM49_06685) - 1320493..1320903 (-) 411 WP_000594935.1 peptide deformylase -
  AMM49_RS06705 (AMM49_06690) gdhA 1320973..1322322 (-) 1350 WP_000200442.1 NADP-specific glutamate dehydrogenase -
  AMM49_RS06710 (AMM49_06695) - 1322490..1322999 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=133775 AMM49_RS06690 WP_000431168.1 1317675..1318115(-) (rcrR) [Streptococcus agalactiae strain NGBS128]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=133775 AMM49_RS06690 WP_000431168.1 1317675..1318115(-) (rcrR) [Streptococcus agalactiae strain NGBS128]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411

Multiple sequence alignment