Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QR90_RS18460 Genome accession   NZ_CP010028
Coordinates   251829..252191 (+) Length   120 a.a.
NCBI ID   WP_039681671.1    Uniprot ID   A0A0A7KCX9
Organism   Deinococcus radiopugnans strain DY59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246829..257191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS01195 (QR90_01195) - 248552..249292 (+) 741 WP_169745383.1 NAD-dependent epimerase/dehydratase family protein -
  QR90_RS01200 (QR90_01200) - 249376..250047 (-) 672 WP_039681669.1 NUDIX domain-containing protein -
  QR90_RS01205 (QR90_01205) dnaB 250047..251393 (-) 1347 WP_039681670.1 replicative DNA helicase -
  QR90_RS18460 (QR90_01210) pilV 251829..252191 (+) 363 WP_039681671.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QR90_RS17025 - 252253..252630 (+) 378 WP_081994781.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QR90_RS17030 - 252845..253963 (+) 1119 WP_169745384.1 O-antigen ligase family protein -
  QR90_RS01215 (QR90_01215) - 254157..255119 (+) 963 WP_039686291.1 IS4 family transposase -
  QR90_RS01220 (QR90_01220) - 255288..256313 (-) 1026 WP_169745385.1 metallophosphoesterase -
  QR90_RS01225 (QR90_01225) - 256398..256823 (+) 426 WP_039681672.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12729.55 Da        Isoelectric Point: 8.4889

>NTDB_id=133684 QR90_RS18460 WP_039681671.1 251829..252191(+) (pilV) [Deinococcus radiopugnans strain DY59]
MKNNTQGFTLIELLIVIAIIGILAAVLIPNLLNARNKANESATQSFVRNTITAVESKRNTVTQALPTETSCVTLQDVTAL
PTGTTSCVVAYNTTADTYTVTAVSKSGKTFTYDGKELKGS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=133684 QR90_RS18460 WP_039681671.1 251829..252191(+) (pilV) [Deinococcus radiopugnans strain DY59]
ATGAAGAACAACACCCAAGGCTTCACCCTGATCGAGCTGCTGATCGTCATCGCCATCATCGGGATTCTGGCGGCGGTTCT
GATTCCTAACCTCCTGAACGCCCGCAACAAAGCCAACGAAAGCGCTACGCAGAGCTTCGTTCGCAACACGATCACGGCGG
TTGAATCCAAGCGGAACACCGTAACCCAGGCTCTCCCCACGGAGACGAGCTGCGTAACTCTGCAGGATGTCACTGCACTG
CCCACCGGTACTACCAGCTGCGTGGTGGCGTATAATACTACGGCAGATACTTATACTGTCACCGCTGTCAGCAAGTCTGG
TAAGACCTTCACCTACGACGGTAAGGAACTCAAGGGCAGCTAA

Domains

Predicted by InterproScan.

Pilin A4 (PilA4)

(39-118)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7KCX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.659

100

0.55

Multiple sequence alignment