Detailed information NTG0133672

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QR90_RS04090
• Genome accession: NZ_CP010028
• Coordinates: 853322..854479 (+)
• Length: 385 a.a.
• NCBI ID: WP_039682437.1
• Uniprot ID: A0A0A7KIU8
• Organism: Deinococcus radiopugnans strain DY59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 848322..859479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR90_RS04080 (QR90_04080)	rimO	849047..850540 (+)	1494	WP_039682434.1	30S ribosomal protein S12 methylthiotransferase RimO	-
QR90_RS17525	-	850589..851218 (+)	630	WP_156122993.1	hypothetical protein	-
QR90_RS04085 (QR90_04085)	-	851433..852887 (-)	1455	WP_039682436.1	2-nitropropane dioxygenase	-
QR90_RS04090 (QR90_04090)	pilD	853322..854479 (+)	1158	WP_039682437.1	prepilin peptidase	Machinery gene
QR90_RS04095 (QR90_04095)	-	854551..855003 (-)	453	WP_039682438.1	hypothetical protein	-
QR90_RS04100 (QR90_04100)	-	855245..856711 (+)	1467	WP_039682439.1	aldehyde dehydrogenase family protein	-
QR90_RS04105 (QR90_04105)	mobA	856718..857302 (+)	585	WP_052195233.1	molybdenum cofactor guanylyltransferase	-
QR90_RS18560	-	857429..857737 (+)	309	WP_420864628.1	transposase-like zinc-binding domain-containing protein	-
QR90_RS04110 (QR90_04110)	-	857791..858150 (+)	360	WP_039682441.1	IS1 family transposase	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40400.57 Da
• Isoelectric Point: 8.4647

>NTDB_id=133672 QR90_RS04090 WP_039682437.1 853322..854479(+) (pilD) [Deinococcus radiopugnans strain DY59]
MNLDVLLVVFTGLFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHGLSPRDLVPLFSWLSLGGKCRYCRAPIKTRYPI
VEALTGLGYAAIALLFPLTLYGAGSLGLMVLFTLLLVGSAIDLDTYTLPDELTLPGVALGLLFGLFNGRNGVEGLPDLAG
AVNGALLGAGLLVAINQFGSWVLRRFRERQYPEFPIGFQQISLGLLAGAWLGPWWGAGVGVLSAAVNGISRRVVRIPELL
TLGGLLLSMVVGSAGGGPGLILMVQGSLAAAGGVSLVAGVYWWIKHRRGAADDSTGDGAEDHYDASAMGFGDVKLAAVIG
AFLGWERLLVALLVAVFAGAIIGVVQLARKQENRVKFGPFLAFGALVALIWGAGIVAGYRGMLGL

Nucleotide

• Length: 1158 bp

>NTDB_id=133672 QR90_RS04090 WP_039682437.1 853322..854479(+) (pilD) [Deinococcus radiopugnans strain DY59]
GTGAATCTCGACGTCTTGCTGGTGGTCTTCACTGGGCTGTTCGGCCTGCTGGTGGGCTCTTTTTCCAACGTGCTGATCTG
GCGGCTGCCGCGCGGTGAGAACATCGCCTTTCCGCCCAGCCATTGCCCCCACTGTGACCACGGCCTGTCCCCGCGCGATC
TGGTGCCGCTGTTTTCCTGGCTGTCGCTGGGCGGCAAATGCCGCTACTGCCGCGCGCCGATCAAGACCCGTTACCCCATC
GTCGAGGCGCTGACCGGGCTGGGCTACGCTGCCATTGCCCTGCTGTTTCCCCTGACCCTTTACGGTGCGGGCAGCCTGGG
CCTGATGGTGCTGTTCACGCTGCTTCTGGTGGGCAGCGCCATTGATCTGGACACCTACACCTTGCCCGACGAATTGACAT
TGCCGGGCGTGGCCCTGGGTCTGCTGTTCGGGTTGTTCAATGGCCGCAACGGGGTAGAGGGGTTGCCTGACCTGGCCGGC
GCGGTCAATGGGGCGCTGCTTGGGGCCGGGCTGCTCGTCGCCATCAACCAGTTCGGTTCGTGGGTGCTGAGGCGCTTCCG
CGAACGCCAGTATCCAGAGTTTCCTATTGGCTTTCAGCAGATCAGCCTCGGCCTGCTGGCGGGGGCGTGGCTGGGGCCGT
GGTGGGGCGCGGGCGTGGGAGTGCTGTCGGCGGCGGTCAACGGCATCAGCCGCCGTGTAGTCCGCATTCCCGAACTGCTG
ACCCTGGGCGGTCTGCTGCTGAGCATGGTGGTGGGCAGCGCGGGTGGCGGCCCCGGCTTGATCCTGATGGTGCAGGGCTC
TTTGGCGGCGGCAGGCGGCGTGTCGCTGGTGGCCGGGGTGTACTGGTGGATCAAGCACCGCCGGGGTGCGGCGGATGACA
GTACAGGCGACGGCGCAGAGGACCACTACGACGCCAGCGCGATGGGCTTCGGTGACGTGAAACTGGCCGCCGTGATCGGC
GCCTTCCTGGGCTGGGAGCGGCTGCTGGTGGCCCTGCTCGTCGCCGTCTTCGCCGGGGCGATCATCGGCGTGGTTCAGCT
GGCCCGCAAGCAGGAAAACCGGGTCAAGTTCGGTCCGTTCCTGGCCTTCGGCGCACTGGTGGCGCTGATCTGGGGCGCGG
GCATCGTGGCGGGTTACCGGGGCATGCTGGGGTTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (234-344)

• Type IV leader peptidase family (Peptidase_A24) (109-217)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

3D structure

• AlphaFold DB: A0A0A7KIU8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	70.332	100	0.714