Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AMD29_RS05505 Genome accession   NZ_CP012419
Coordinates   1061934..1063667 (-) Length   577 a.a.
NCBI ID   WP_000647647.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056934..1068667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS05475 (AMD29_05465) - 1057005..1057838 (-) 834 WP_000455163.1 lipoate--protein ligase family protein -
  AMD29_RS05480 (AMD29_05470) coaB 1057992..1058678 (+) 687 WP_001873490.1 phosphopantothenate--cysteine ligase -
  AMD29_RS05485 (AMD29_05475) coaC 1058671..1059213 (+) 543 WP_000595814.1 phosphopantothenoylcysteine decarboxylase -
  AMD29_RS05490 (AMD29_05480) - 1059259..1059831 (+) 573 WP_000728786.1 ECF transporter S component -
  AMD29_RS05495 (AMD29_05485) - 1059941..1061659 (+) 1719 WP_000222544.1 phospho-sugar mutase -
  AMD29_RS05500 (AMD29_05490) - 1061723..1061920 (-) 198 WP_000746856.1 hypothetical protein -
  AMD29_RS05505 (AMD29_05495) rcrQ 1061934..1063667 (-) 1734 WP_000647647.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS05510 (AMD29_05500) - 1063668..1065386 (-) 1719 WP_000826945.1 ABC transporter ATP-binding protein -
  AMD29_RS05515 (AMD29_05505) - 1065398..1066000 (-) 603 WP_000472259.1 lysozyme family protein -
  AMD29_RS05520 (AMD29_05510) - 1066002..1066979 (-) 978 WP_000968655.1 nucleoid-associated protein -
  AMD29_RS05525 (AMD29_05515) glyA 1066984..1068240 (-) 1257 WP_000575546.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64228.89 Da        Isoelectric Point: 8.2055

>NTDB_id=133665 AMD29_RS05505 WP_000647647.1 1061934..1063667(-) (rcrQ) [Streptococcus agalactiae strain SG-M1]
MKASHPKKIQKKLVQDLLSKKSLVGMALLGTVVQVCLTVYLPVLIGQAVDVVLSPHSMILLLPIMWKMVAVILANTIIQW
INPLLYNRLIFHYVASLRKAVMEKLNQLPVAYLDKRGIGDLISRVTTDTEQLSNGLLMVFNQFFVGLLTILVTIFSMAKI
DLLMLFLVLFLTPLSLFLARFIAKKSYHLYQNQTASRGRQTQFIEEMVSQESLIQAFSAQEESSDHFRTINQEYANFSQS
AIFYSSTVNPSTRFINSLIYGFLAGIGALRIMSGAFSVGQLITFLNYVNQYTKPFNDISSVLSEMQSALACAERLYSILE
ESSPNITGTEKLDSSTVKGQIDFKNVVFGYNKSKPLLNGINLHIPAGAKVAIVGPTGAGKSTLINLLMRFYEVDGGNILL
DGKPITDYEPSQLRQEIGMVLQETWLKSATIHDNIAYANPKASREEVIEAAKAANADFFIKQLPNGYDTYLEDAGDSLSQ
GQCQLLTIARIFLKLPRILILDEATSSIDTRTEVLVQEAFQMLMKGRTSFIIAHRLSTIQTADIILVMVSGEIVEVGNHS
ELMAQKGIYYQMQNAQK

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=133665 AMD29_RS05505 WP_000647647.1 1061934..1063667(-) (rcrQ) [Streptococcus agalactiae strain SG-M1]
ATGAAAGCAAGTCATCCTAAAAAGATACAAAAAAAGCTTGTTCAAGATCTTCTTTCTAAAAAAAGCTTAGTAGGAATGGC
ATTATTAGGGACGGTAGTACAAGTTTGCCTCACTGTTTATTTGCCTGTTCTAATTGGACAAGCGGTAGACGTTGTATTAT
CGCCTCATTCTATGATATTATTGTTACCTATAATGTGGAAGATGGTTGCAGTTATTTTAGCAAATACTATTATTCAATGG
ATTAATCCTCTGCTCTATAACCGCTTAATTTTTCATTATGTTGCTTCTTTAAGAAAGGCTGTAATGGAAAAGTTGAATCA
ATTACCTGTAGCTTACCTTGATAAACGTGGCATAGGTGACTTGATTAGTCGTGTGACTACCGATACGGAGCAATTATCAA
ATGGTTTATTAATGGTTTTCAACCAGTTCTTTGTTGGTTTATTAACTATTCTAGTTACTATTTTTAGTATGGCAAAGATT
GATTTATTAATGCTTTTTTTGGTATTATTTCTGACGCCTTTATCACTCTTTCTAGCCCGCTTTATTGCTAAAAAGAGTTA
TCACTTATATCAAAATCAAACGGCATCACGAGGACGACAAACTCAATTCATTGAAGAGATGGTGAGTCAAGAAAGCCTTA
TTCAAGCATTCAGTGCGCAAGAAGAAAGTAGTGATCATTTTAGGACTATTAATCAAGAGTATGCTAACTTTTCTCAATCA
GCAATTTTTTATTCTTCAACTGTCAATCCATCAACCCGATTTATCAATAGTTTGATTTATGGCTTCTTAGCTGGGATTGG
TGCCCTTCGTATTATGTCAGGGGCTTTTAGTGTTGGTCAATTAATCACTTTCTTAAATTATGTCAATCAATATACTAAGC
CATTTAATGACATCTCTTCCGTCCTGTCTGAGATGCAAAGTGCTCTGGCTTGTGCAGAACGCCTTTACTCTATTTTAGAA
GAATCGTCACCAAATATAACAGGGACAGAAAAACTTGATTCATCAACGGTCAAGGGTCAAATCGATTTTAAAAATGTTGT
TTTTGGTTATAATAAATCAAAACCACTATTGAATGGTATTAATTTACACATTCCAGCAGGAGCTAAGGTCGCTATTGTAG
GACCAACAGGTGCTGGGAAGTCTACTTTAATCAATTTATTAATGCGTTTCTATGAAGTTGACGGGGGAAATATCCTTTTA
GATGGTAAGCCTATTACTGATTATGAGCCATCACAATTAAGGCAAGAAATTGGAATGGTATTACAAGAAACGTGGTTAAA
AAGTGCTACGATTCACGATAACATTGCATATGCCAATCCTAAAGCTAGCCGTGAAGAAGTGATAGAGGCTGCAAAAGCAG
CTAATGCAGATTTCTTTATCAAACAATTACCGAATGGATATGATACGTATTTAGAAGATGCTGGAGATTCGCTATCACAG
GGGCAATGTCAGCTATTGACAATTGCTCGTATTTTTCTTAAATTACCTAGAATATTGATATTAGATGAGGCGACATCGTC
TATAGATACTCGTACTGAAGTTCTTGTTCAAGAAGCATTCCAAATGTTGATGAAGGGGAGAACAAGCTTTATTATTGCAC
ATCGCTTATCTACCATTCAAACAGCAGATATTATTTTAGTTATGGTATCTGGTGAAATTGTAGAAGTGGGTAACCACTCT
GAATTAATGGCTCAAAAAGGTATTTATTATCAAATGCAAAATGCACAAAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(25-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.991

97.92

0.362

Multiple sequence alignment