Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | QR90_RS00315 | Genome accession | NZ_CP010028 |
| Coordinates | 63477..63938 (+) | Length | 153 a.a. |
| NCBI ID | WP_039681547.1 | Uniprot ID | A0A0A7KCQ6 |
| Organism | Deinococcus radiopugnans strain DY59 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 58477..68938
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR90_RS18215 | - | 59108..59842 (+) | 735 | WP_245616371.1 | hypothetical protein | - |
| QR90_RS00305 (QR90_00305) | - | 59876..60664 (-) | 789 | WP_039681545.1 | enoyl-CoA hydratase-related protein | - |
| QR90_RS00310 (QR90_00310) | ruvX | 60704..61120 (+) | 417 | WP_039681546.1 | Holliday junction resolvase RuvX | - |
| QR90_RS17455 | - | 61237..63477 (+) | 2241 | WP_156122917.1 | hypothetical protein | - |
| QR90_RS00315 (QR90_00315) | pilV | 63477..63938 (+) | 462 | WP_039681547.1 | pilus assembly FimT family protein | Machinery gene |
| QR90_RS00320 (QR90_00320) | - | 63939..64466 (+) | 528 | WP_052195132.1 | type II secretion system protein | - |
| QR90_RS00325 (QR90_00325) | - | 64463..65308 (+) | 846 | WP_039681548.1 | PilW family protein | - |
| QR90_RS00330 (QR90_00330) | - | 65371..67077 (+) | 1707 | WP_039681549.1 | dynamin family protein | - |
| QR90_RS00335 (QR90_00335) | rpmB | 67239..67454 (+) | 216 | WP_039681550.1 | 50S ribosomal protein L28 | - |
| QR90_RS00340 (QR90_00340) | lspA | 67538..68140 (-) | 603 | WP_081994748.1 | signal peptidase II | - |
| QR90_RS00345 (QR90_00345) | - | 68204..68674 (+) | 471 | WP_039681552.1 | S-ribosylhomocysteine lyase | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 16100.79 Da Isoelectric Point: 10.1030
>NTDB_id=133665 QR90_RS00315 WP_039681547.1 63477..63938(+) (pilV) [Deinococcus radiopugnans strain DY59]
MNRQGFTLLEILVVLGIIAILMGIMGVNLIRSIRTAELREAATQIATDFRRARSQAQRGSMDIVLVLPGSGGGKVYKVDT
VEKVLPNSVQVICKTTCGSGTTTNVTYQAPYGELGAGATGSVYTVRSPMSGINDLEIRVVGVTGKVILTKAGS
MNRQGFTLLEILVVLGIIAILMGIMGVNLIRSIRTAELREAATQIATDFRRARSQAQRGSMDIVLVLPGSGGGKVYKVDT
VEKVLPNSVQVICKTTCGSGTTTNVTYQAPYGELGAGATGSVYTVRSPMSGINDLEIRVVGVTGKVILTKAGS
Nucleotide
Download Length: 462 bp
>NTDB_id=133665 QR90_RS00315 WP_039681547.1 63477..63938(+) (pilV) [Deinococcus radiopugnans strain DY59]
ATGAACCGCCAGGGCTTTACCCTCCTTGAAATTCTGGTCGTTCTGGGCATCATCGCTATTCTCATGGGTATAATGGGAGT
CAATTTAATTCGTAGTATCCGCACAGCAGAGTTGCGTGAGGCTGCCACCCAGATTGCCACCGATTTTCGGCGGGCGCGTT
CGCAGGCGCAGCGGGGCAGCATGGATATCGTGTTGGTTTTGCCTGGTAGTGGCGGCGGCAAGGTCTACAAGGTGGATACC
GTCGAAAAGGTTTTGCCAAACAGTGTCCAGGTGATTTGCAAAACGACCTGTGGCAGCGGGACAACGACCAACGTGACCTA
TCAGGCGCCCTATGGCGAACTGGGGGCGGGAGCGACGGGAAGCGTCTACACCGTCAGAAGTCCCATGAGCGGAATCAACG
ATCTCGAAATCAGGGTTGTTGGTGTGACCGGAAAGGTCATTCTGACGAAGGCGGGATCTTGA
ATGAACCGCCAGGGCTTTACCCTCCTTGAAATTCTGGTCGTTCTGGGCATCATCGCTATTCTCATGGGTATAATGGGAGT
CAATTTAATTCGTAGTATCCGCACAGCAGAGTTGCGTGAGGCTGCCACCCAGATTGCCACCGATTTTCGGCGGGCGCGTT
CGCAGGCGCAGCGGGGCAGCATGGATATCGTGTTGGTTTTGCCTGGTAGTGGCGGCGGCAAGGTCTACAAGGTGGATACC
GTCGAAAAGGTTTTGCCAAACAGTGTCCAGGTGATTTGCAAAACGACCTGTGGCAGCGGGACAACGACCAACGTGACCTA
TCAGGCGCCCTATGGCGAACTGGGGGCGGGAGCGACGGGAAGCGTCTACACCGTCAGAAGTCCCATGAGCGGAATCAACG
ATCTCGAAATCAGGGTTGTTGGTGTGACCGGAAAGGTCATTCTGACGAAGGCGGGATCTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
71.523 |
98.693 |
0.706 |