Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OI25_RS10820 Genome accession   NZ_CP010026
Coordinates   1274562..1276079 (+) Length   505 a.a.
NCBI ID   WP_046566900.1    Uniprot ID   A0AAP5Q7B5
Organism   Paraburkholderia fungorum strain ATCC BAA-463     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269562..1281079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI25_RS10795 (OI25_1103) kdsD 1270754..1271737 (+) 984 WP_028199095.1 arabinose 5-phosphate isomerase KdsD -
  OI25_RS10800 (OI25_1104) - 1271737..1272297 (+) 561 WP_046566898.1 KdsC family phosphatase -
  OI25_RS10805 (OI25_1105) lptC 1272294..1272902 (+) 609 WP_028199093.1 LPS export ABC transporter periplasmic protein LptC -
  OI25_RS10810 (OI25_1106) lptA 1272923..1273594 (+) 672 WP_028199092.1 lipopolysaccharide transport periplasmic protein LptA -
  OI25_RS10815 (OI25_1107) lptB 1273591..1274376 (+) 786 WP_028199091.1 LPS export ABC transporter ATP-binding protein -
  OI25_RS10820 (OI25_1108) rpoN/rpoN1 1274562..1276079 (+) 1518 WP_046566900.1 RNA polymerase factor sigma-54 Machinery gene
  OI25_RS10825 (OI25_1109) hpf 1276250..1276606 (+) 357 WP_028199089.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OI25_RS10830 (OI25_1110) - 1276911..1277426 (+) 516 WP_081833202.1 PTS sugar transporter subunit IIA -
  OI25_RS10835 (OI25_1111) hprK 1277586..1278554 (+) 969 WP_007179412.1 HPr(Ser) kinase/phosphatase -
  OI25_RS10840 (OI25_1112) rapZ 1278661..1279554 (+) 894 WP_028199087.1 RNase adapter RapZ -
  OI25_RS10845 (OI25_1113) - 1279594..1280226 (+) 633 WP_028199086.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55569.67 Da        Isoelectric Point: 5.0706

>NTDB_id=133651 OI25_RS10820 WP_046566900.1 1274562..1276079(+) (rpoN/rpoN1) [Paraburkholderia fungorum strain ATCC BAA-463]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQAPNSSPPSDQM
GGNTSSSSTSSSERAENGEPQGVDEYNGLASDGNGDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVT
QASQRDRALITFLIESLDDDGYLAATLEEVLADLPDELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLEQSP
TRTLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHILIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=133651 OI25_RS10820 WP_046566900.1 1274562..1276079(+) (rpoN/rpoN1) [Paraburkholderia fungorum strain ATCC BAA-463]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACCCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GCTGTCCACGCTCGAACTGCAGCAGGAAGTCGCAATGGCGATCTCGCAGAATCCGCTCCTCGAGAACGAGGACGACTGGA
TCGCGAGCCCCCTGCGCGTGGCGGCCGACGGTTCCCTGATCGCCCAGGCGCCCAATTCTTCGCCACCGTCGGACCAGATG
GGCGGCAATACGTCGTCCTCGTCCACCAGCAGCAGCGAGCGTGCCGAGAATGGCGAACCGCAGGGTGTGGACGAATACAA
CGGCCTCGCGAGCGACGGCAACGGCGATGCGTCGCAATGGAATCTCGACGATTACGGCCGCTCCGGCAATGCGTCGGACG
ACGACGATCTGCCGCCGCTGCAAATCCACGAATCGAGCACCTCGCTGCGCGATCACCTGATGGCGCAACTTCGCGTCACC
CAGGCCAGCCAACGCGACCGCGCGCTGATCACCTTCCTGATCGAATCGCTCGACGACGACGGCTATCTTGCCGCCACGCT
CGAAGAGGTGCTGGCCGATCTGCCCGATGAGCTCGAAGTCGATCTCGACGAAATGAATGCCGCGCTGGCGTTGCTACACA
GCTTCGACCCGGCTGGGGTCGGTGCGCGCTCCGCGTCGGAATGTCTCAAGCTGCAATTGCTGCGGCTCGAGCAGTCGCCT
ACCCGCACACTTGCGCTCGACATCGTCGCCCATCATCTGGAACTGCTCGCCGCACGCGATTTCACGCGCCTGCGCAAGCA
TCTGAAGGCGAACGACGACGATCTGCGCGATGCGCATATTCTGATCCGCTCGCTCGAGCCGTTTCCGGGCGCTGCGTACG
GCAAGGCCGAGGCCGACTACGTGGTGCCGGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAGCTCAATCCG
GAAGTGGTGCCGAAGCTGCGTATCAACCATCTATACGCGAATATTCTGCGCAATAACCGCGGCGATCCGGGCAGTGGATC
GTTGCGCCAGCAACTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGGGTCGCCC
AGGCTATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGAGAAATTGCT
GATACGCTGGGCCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCACACGTTTCGACTGACACGGGCGGCGCGGCCTCTTCAACGGCTATTCGCGCGCTCATCA
AGCAACTGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAGGGCTTC
GTGGTCGCACGGCGTACCGTTGCGAAGTATCGCGAAGCGCTGAAGATTCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.602

100

0.675

Multiple sequence alignment