Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AMD29_RS00180 Genome accession   NZ_CP012419
Coordinates   13135..13896 (+) Length   253 a.a.
NCBI ID   WP_001266268.1    Uniprot ID   Q3K407
Organism   Streptococcus agalactiae strain SG-M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8135..18896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS00165 (AMD29_00165) pcsB 9469..10770 (+) 1302 WP_000746069.1 peptidoglycan hydrolase PcsB -
  AMD29_RS00170 (AMD29_00170) - 10894..11862 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  AMD29_RS00175 (AMD29_00175) - 11970..13145 (+) 1176 WP_000171458.1 pyridoxal phosphate-dependent aminotransferase -
  AMD29_RS00180 (AMD29_00180) recO 13135..13896 (+) 762 WP_001266268.1 DNA repair protein RecO Machinery gene
  AMD29_RS00185 (AMD29_00185) - 13959..14837 (+) 879 WP_000420125.1 CPBP family intramembrane glutamic endopeptidase -
  AMD29_RS00190 (AMD29_00190) plsX 14915..15907 (+) 993 WP_000717412.1 phosphate acyltransferase PlsX -
  AMD29_RS00195 (AMD29_00195) - 15918..16157 (+) 240 WP_000085642.1 acyl carrier protein -
  AMD29_RS00200 (AMD29_00200) purC 16281..16988 (+) 708 WP_000184493.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29642.07 Da        Isoelectric Point: 6.4090

>NTDB_id=133601 AMD29_RS00180 WP_001266268.1 13135..13896(+) (recO) [Streptococcus agalactiae strain SG-M1]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLHLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=133601 AMD29_RS00180 WP_001266268.1 13135..13896(+) (recO) [Streptococcus agalactiae strain SG-M1]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGCACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K407

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625