Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QF06_RS12230 Genome accession   NZ_CP010014
Coordinates   2477762..2478508 (-) Length   248 a.a.
NCBI ID   WP_080332541.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2472762..2483508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS12205 (QF06_12205) mreC 2473167..2474039 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  QF06_RS12210 (QF06_12210) mreB 2474070..2475083 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QF06_RS12215 (QF06_12215) radC 2475175..2475870 (-) 696 WP_041850180.1 DNA repair protein RadC -
  QF06_RS12220 (QF06_12220) - 2475907..2476476 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QF06_RS12225 (QF06_12225) spoIIB 2476630..2477628 (-) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  QF06_RS12230 (QF06_12230) comC 2477762..2478508 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  QF06_RS12235 (QF06_12235) - 2478648..2479940 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QF06_RS12240 (QF06_12240) valS 2480000..2482642 (-) 2643 WP_041850183.1 valine--tRNA ligase -
  QF06_RS12245 (QF06_12245) - 2483090..2483281 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=133578 QF06_RS12230 WP_080332541.1 2477762..2478508(-) (comC) [Bacillus sp. YP1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDTWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=133578 QF06_RS12230 WP_080332541.1 2477762..2478508(-) (comC) [Bacillus sp. YP1]
ATGCTATCCATTCTTTTTATCTTCGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATACCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment