Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QF06_RS09355 Genome accession   NZ_CP010014
Coordinates   1948763..1949383 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943763..1954383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS09315 (QF06_09315) - 1944894..1945400 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  QF06_RS09320 (QF06_09320) - 1945538..1945957 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  QF06_RS09325 (QF06_09325) - 1945978..1946355 (-) 378 WP_004398696.1 YppG family protein -
  QF06_RS09330 (QF06_09330) - 1946543..1946731 (+) 189 WP_003230690.1 YppF family protein -
  QF06_RS09335 (QF06_09335) - 1946770..1947141 (-) 372 WP_021481525.1 YppE family protein -
  QF06_RS09340 (QF06_09340) - 1947187..1947432 (-) 246 WP_041849959.1 DUF5446 family protein -
  QF06_RS09345 (QF06_09345) sspM 1947631..1947735 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QF06_RS09350 (QF06_09350) - 1947760..1948722 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  QF06_RS09355 (QF06_09355) recU 1948763..1949383 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QF06_RS09360 (QF06_09360) - 1949405..1952155 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  QF06_RS09365 (QF06_09365) - 1952230..1952724 (-) 495 WP_041849962.1 hypothetical protein -
  QF06_RS09370 (QF06_09370) nth 1952721..1953380 (-) 660 WP_009967580.1 endonuclease III -
  QF06_RS09375 (QF06_09375) dnaD 1953399..1954097 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=133558 QF06_RS09355 WP_004399067.1 1948763..1949383(+) (recU) [Bacillus sp. YP1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=133558 QF06_RS09355 WP_004399067.1 1948763..1949383(+) (recU) [Bacillus sp. YP1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment