Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QF06_RS08605 Genome accession   NZ_CP010014
Coordinates   1817472..1818602 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1816107..1838888 1817472..1818602 within 0


Gene organization within MGE regions


Location: 1816107..1838888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS08595 (QF06_08595) - 1816107..1816481 (+) 375 WP_021481445.1 YoqO family protein -
  QF06_RS22280 - 1817193..1817339 (+) 147 Protein_1741 phage holin -
  QF06_RS08605 (QF06_08605) rapC 1817472..1818602 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  QF06_RS21770 - 1818592..1818735 (+) 144 WP_153801665.1 hypothetical protein -
  QF06_RS22110 (QF06_08610) - 1818889..1819089 (-) 201 WP_021481449.1 hypothetical protein -
  QF06_RS22115 - 1819311..1819685 (-) 375 Protein_1745 UV damage repair protein UvrX -
  QF06_RS21140 - 1819683..1819838 (-) 156 Protein_1746 T7SS effector LXG polymorphic toxin -
  QF06_RS08625 (QF06_08625) - 1819939..1820496 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  QF06_RS08630 (QF06_08630) - 1820624..1822060 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  QF06_RS08635 (QF06_08635) csaA 1822310..1822642 (-) 333 WP_032725963.1 chaperone CsaA -
  QF06_RS08640 (QF06_08640) - 1822707..1823432 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  QF06_RS08645 (QF06_08645) - 1823447..1824187 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  QF06_RS08650 (QF06_08650) - 1824265..1824840 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  QF06_RS08655 (QF06_08655) - 1824846..1825547 (-) 702 WP_015714087.1 MBL fold metallo-hydrolase -
  QF06_RS08660 (QF06_08660) - 1825623..1826105 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  QF06_RS08665 (QF06_08665) - 1826159..1827097 (-) 939 WP_015714088.1 YafY family protein -
  QF06_RS08670 (QF06_08670) csk22 1827302..1827847 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  QF06_RS08675 (QF06_08675) czrA 1827874..1828197 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  QF06_RS08680 (QF06_08680) - 1828392..1829069 (+) 678 WP_014480011.1 lysozyme family protein -
  QF06_RS08685 (QF06_08685) - 1829159..1829695 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  QF06_RS08690 (QF06_08690) - 1829832..1830614 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  QF06_RS08695 (QF06_08695) - 1830785..1831282 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  QF06_RS08700 (QF06_08700) - 1831346..1832323 (+) 978 WP_015714091.1 LD-carboxypeptidase -
  QF06_RS08705 (QF06_08705) desE 1832486..1833544 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  QF06_RS08710 (QF06_08710) desK 1833664..1834776 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  QF06_RS08715 (QF06_08715) desR 1834795..1835394 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  QF06_RS08720 (QF06_08720) - 1836002..1836865 (-) 864 WP_014480017.1 3D domain-containing protein -
  QF06_RS08725 (QF06_08725) recQ 1837113..1838888 (-) 1776 WP_015714092.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=133557 QF06_RS08605 WP_021481447.1 1817472..1818602(+) (rapC) [Bacillus sp. YP1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=133557 QF06_RS08605 WP_021481447.1 1817472..1818602(+) (rapC) [Bacillus sp. YP1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment