Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DE8555_RS10530 Genome accession   NZ_CP012393
Coordinates   2031108..2032076 (+) Length   322 a.a.
NCBI ID   WP_002221667.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026108..2037076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS14020 (DE8555_1974) - 2026183..2026329 (-) 147 WP_002240086.1 hypothetical protein -
  DE8555_RS10515 (DE8555_1975) fetA 2027054..2029216 (+) 2163 WP_063399908.1 TonB-dependent siderophore receptor FetA/FrpB -
  DE8555_RS10520 (DE8555_1976) - 2029914..2030879 (+) 966 WP_063399798.1 siderophore ABC transporter substrate-binding protein -
  DE8555_RS10525 - 2030897..2031073 (+) 177 WP_162051242.1 hypothetical protein -
  DE8555_RS10530 (DE8555_1977) ceuB 2031108..2032076 (+) 969 WP_002221667.1 ABC transporter permease Machinery gene
  DE8555_RS10535 (DE8555_1978) - 2032066..2033040 (+) 975 WP_002256221.1 iron chelate uptake ABC transporter family permease subunit -
  DE8555_RS10540 (DE8555_1979) - 2033085..2033711 (+) 627 WP_002256222.1 hypothetical protein -
  DE8555_RS10545 (DE8555_1980) - 2033791..2034549 (+) 759 WP_002221671.1 ABC transporter ATP-binding protein -
  DE8555_RS10550 (DE8555_1981) - 2034865..2036061 (+) 1197 WP_002248170.1 YadA-like family protein -
  DE8555_RS10555 (DE8555_1982) - 2036127..2036465 (-) 339 WP_002218119.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34451.77 Da        Isoelectric Point: 9.9393

>NTDB_id=133528 DE8555_RS10530 WP_002221667.1 2031108..2032076(+) (ceuB) [Neisseria meningitidis strain DE8555]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADRLTILGLGETVSVNLGLNRTAILWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAY
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=133528 DE8555_RS10530 WP_002221667.1 2031108..2032076(+) (ceuB) [Neisseria meningitidis strain DE8555]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGTGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTTTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCCACCTTTATTGCGTAT
GAAAACGAAATGCTGCAAATGCTGGGCGTGTGGCAACAGGGCGATTTTTCCGGCGTGTTGCTCGGACGGTATGAACTGTT
GTGGGCAACGGGGATTTTGGCTTTGTTTGCCTATTTGATTGCCGACCGGCTGACGATTTTGGGTTTGGGCGAAACGGTAA
GCGTGAACTTGGGGCTGAACCGGACGGCGATTCTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTCATC
GTTACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCTTTGTTGGGCGCGTCTTTGGTGTTGCTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTATTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTGAGGAAACCCGCCTAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391

Multiple sequence alignment