Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC9_RS08190 Genome accession   NZ_CP009984
Coordinates   1789289..1790710 (+) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus strain FORC_009     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784289..1795710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS08165 (FORC9_1597) cobC 1784972..1785610 (-) 639 WP_060531889.1 alpha-ribazole phosphatase -
  FORC9_RS08170 (FORC9_1598) cobU 1785620..1786180 (-) 561 WP_060531891.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FORC9_RS08175 (FORC9_1599) - 1786183..1786950 (-) 768 WP_060531893.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC9_RS08180 (FORC9_1600) cobT 1786952..1787980 (-) 1029 WP_060531894.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC9_RS08185 (FORC9_1602) - 1788517..1789215 (+) 699 WP_060531896.1 oxidoreductase -
  FORC9_RS08190 (FORC9_1603) sbcB 1789289..1790710 (+) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  FORC9_RS08195 (FORC9_1604) - 1790757..1791128 (+) 372 WP_011080627.1 CidA/LrgA family protein -
  FORC9_RS08200 (FORC9_1605) - 1791131..1791808 (+) 678 WP_011080628.1 LrgB family protein -
  FORC9_RS08205 (FORC9_1606) - 1792120..1792512 (+) 393 WP_060531898.1 SulA-like leucine-rich domain-containing protein -
  FORC9_RS08210 (FORC9_1607) - 1792715..1793818 (+) 1104 WP_060531900.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC9_RS08215 (FORC9_1608) - 1793892..1794296 (-) 405 WP_011080631.1 hypothetical protein -
  FORC9_RS08220 (FORC9_1609) - 1794535..1795302 (-) 768 WP_060531901.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=133469 FORC9_RS08190 WP_011150112.1 1789289..1790710(+) (sbcB) [Vibrio vulnificus strain FORC_009]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=133469 FORC9_RS08190 WP_011150112.1 1789289..1790710(+) (sbcB) [Vibrio vulnificus strain FORC_009]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTAGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCAATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACTGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment