Detailed information NTG0133411

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC8_RS02680
• Genome accession: NZ_CP009982
• Coordinates: 548105..549094 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 543105..554094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC8_RS02645 (FORC8_0452)	ftsB	543113..543394 (+)	282	WP_031849042.1	cell division protein FtsB	-
FORC8_RS02650 (FORC8_0453)	ispD	543396..544100 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC8_RS02655 (FORC8_0454)	ispF	544118..544594 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC8_RS02660 (FORC8_0455)	truD	544641..545684 (+)	1044	WP_053046852.1	tRNA pseudouridine(13) synthase TruD	-
FORC8_RS02665 (FORC8_0456)	surE	545684..546460 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
FORC8_RS02670 (FORC8_0457)	-	546460..547086 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC8_RS02675 (FORC8_0458)	-	547101..548024 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC8_RS02680 (FORC8_0459)	rpoS	548105..549094 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC8_RS02685 (FORC8_0460)	mutS	549173..551734 (-)	2562	WP_025579176.1	DNA mismatch repair protein MutS	-
FORC8_RS02690 (FORC8_0461)	pncC	551819..552301 (+)	483	WP_053046854.1	nicotinamide-nucleotide amidase	-
FORC8_RS02695 (FORC8_0462)	recA	552502..553545 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=133411 FORC8_RS02680 WP_005478537.1 548105..549094(+) (rpoS) [Vibrio parahaemolyticus strain FORC_008]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=133411 FORC8_RS02680 WP_005478537.1 548105..549094(+) (rpoS) [Vibrio parahaemolyticus strain FORC_008]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851