Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DE8669_RS10475 Genome accession   NZ_CP012391
Coordinates   2035260..2035766 (+) Length   168 a.a.
NCBI ID   WP_002224131.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030260..2040766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS10445 (DE8669_1965) - 2030271..2031806 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  DE8669_RS13180 (DE8669_1966) - 2031803..2031895 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DE8669_RS10450 (DE8669_1967) lysA 2031931..2033175 (-) 1245 WP_002224130.1 diaminopimelate decarboxylase -
  DE8669_RS10455 (DE8669_1968) lptM 2033186..2033356 (-) 171 WP_002219896.1 LPS translocon maturation chaperone LptM -
  DE8669_RS10460 (DE8669_1969) cyaY 2033427..2033750 (+) 324 WP_002219897.1 iron donor protein CyaY -
  DE8669_RS10465 (DE8669_1970) - 2033777..2034793 (+) 1017 WP_002219898.1 YeiH family protein -
  DE8669_RS10470 (DE8669_1971) - 2034819..2035238 (+) 420 WP_002219899.1 DUF2251 domain-containing protein -
  DE8669_RS10475 (DE8669_1972) luxS 2035260..2035766 (+) 507 WP_002224131.1 S-ribosylhomocysteine lyase Regulator
  DE8669_RS10480 (DE8669_1973) polA 2035911..2038700 (+) 2790 WP_002224132.1 DNA polymerase I -
  DE8669_RS10485 (DE8669_1974) - 2040046..2040717 (+) 672 WP_002224133.1 Fic family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18650.34 Da        Isoelectric Point: 5.5101

>NTDB_id=133387 DE8669_RS10475 WP_002224131.1 2035260..2035766(+) (luxS) [Neisseria meningitidis strain DE8669]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLAHKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=133387 DE8669_RS10475 WP_002224131.1 2035260..2035766(+) (luxS) [Neisseria meningitidis strain DE8669]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTATTCGACCTGCGTTTCTGCGTGCCCAACAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTCGCCGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATTATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCACAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762