Detailed information NTG0133336

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PN96_RS12185
• Genome accession: NZ_CP009977
• Coordinates: 2628221..2629228 (+)
• Length: 335 a.a.
• NCBI ID: WP_014230660.1
• Uniprot ID: -
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2623221..2634228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PN96_RS12165 (PN96_12000)	rplC	2623748..2624377 (-)	630	WP_014230663.1	50S ribosomal protein L3	-
PN96_RS12170 (PN96_12005)	rpsJ	2624392..2624703 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
PN96_RS12175 (PN96_12010)	rpmE	2625162..2625383 (-)	222	WP_014230662.1	50S ribosomal protein L31	-
PN96_RS12180 (PN96_12015)	priA	2625681..2627885 (+)	2205	WP_020335801.1	primosomal protein N'	-
PN96_RS12185 (PN96_12020)	cytR	2628221..2629228 (+)	1008	WP_014230660.1	DNA-binding transcriptional regulator CytR	Regulator
PN96_RS12190 (PN96_12025)	-	2629390..2629935 (+)	546	WP_014230659.1	SPOR domain-containing protein	-
PN96_RS12195 (PN96_12030)	hslV	2630090..2630641 (+)	552	WP_020335799.1	ATP-dependent protease subunit HslV	-
PN96_RS12200 (PN96_12035)	hslU	2630665..2631996 (+)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
PN96_RS12205 (PN96_12040)	-	2632252..2633169 (+)	918	WP_020335798.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PN96_RS12210 (PN96_12045)	rraA	2633246..2633788 (+)	543	WP_014230655.1	ribonuclease E activity regulator RraA	-
PN96_RS12215 (PN96_12050)	zapB	2633862..2634104 (-)	243	WP_014230654.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.30 Da
• Isoelectric Point: 6.2447

>NTDB_id=133336 PN96_RS12185 WP_014230660.1 2628221..2629228(+) (cytR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=133336 PN96_RS12185 WP_014230660.1 2628221..2629228(+) (cytR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAATCGAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCCATGGAGCACGGCTACCTGGTTTTGCTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACCTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTTAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTCGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGAGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTTGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACGATCTCTCAGCCTCGTTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCTGCGCCTCCTCAACGAGCGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.612	100	0.976
cytR	Vibrio cholerae C6706	89.222	99.701	0.89