Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PN96_RS01275 Genome accession   NZ_CP009977
Coordinates   245762..246280 (+) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 240762..251280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN96_RS01265 (PN96_01235) gshA 243494..245062 (+) 1569 WP_020333954.1 glutamate--cysteine ligase -
  PN96_RS01270 (PN96_01240) - 245087..245692 (+) 606 WP_014232963.1 hypothetical protein -
  PN96_RS01275 (PN96_01245) luxS 245762..246280 (+) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  PN96_RS01280 (PN96_01250) - 246365..247642 (-) 1278 WP_014232961.1 CNNM domain-containing protein -
  PN96_RS01285 (PN96_01255) - 247761..248555 (-) 795 WP_014232960.1 inner membrane protein YpjD -
  PN96_RS01290 (PN96_01260) ffh 248780..250162 (+) 1383 WP_014232959.1 signal recognition particle protein -
  PN96_RS01295 (PN96_01265) rpsP 250371..250619 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  PN96_RS01300 (PN96_01270) rimM 250650..251198 (+) 549 WP_014232958.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=133315 PN96_RS01275 WP_014232962.1 245762..246280(+) (luxS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=133315 PN96_RS01275 WP_014232962.1 245762..246280(+) (luxS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCTGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGATTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGACGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment