Detailed information NTG0133312

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PN96_RS01145
• Genome accession: NZ_CP009977
• Coordinates: 223159..224145 (+)
• Length: 328 a.a.
• NCBI ID: WP_061778639.1
• Uniprot ID: A0AAN0Y3X5
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 218159..229145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PN96_RS01110 (PN96_01080)	ftsB	218170..218451 (+)	282	WP_014232984.1	cell division protein FtsB	-
PN96_RS01115 (PN96_01085)	ispD	218453..219160 (+)	708	WP_020333970.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PN96_RS01120 (PN96_01090)	ispF	219174..219653 (+)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PN96_RS01125 (PN96_01095)	truD	219696..220739 (+)	1044	WP_020333968.1	tRNA pseudouridine(13) synthase TruD	-
PN96_RS01130 (PN96_01100)	surE	220769..221515 (+)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
PN96_RS01135 (PN96_01105)	-	221515..222141 (+)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PN96_RS01140 (PN96_01110)	-	222155..223078 (+)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
PN96_RS01145 (PN96_01115)	rpoS	223159..224145 (+)	987	WP_061778639.1	RNA polymerase sigma factor RpoS	Regulator
PN96_RS01150 (PN96_01120)	mutS	224220..226781 (-)	2562	WP_014232976.1	DNA mismatch repair protein MutS	-
PN96_RS01155 (PN96_01125)	pncC	226866..227357 (+)	492	WP_020333963.1	nicotinamide-nucleotide amidase	-
PN96_RS01160 (PN96_01130)	recA	227548..228594 (+)	1047	WP_014232974.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37316.14 Da
• Isoelectric Point: 4.7268

>NTDB_id=133312 PN96_RS01145 WP_061778639.1 223159..224145(+) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLNRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=133312 PN96_RS01145 WP_061778639.1 223159..224145(+) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGTTTAGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGAACCGTGCAGTTGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACCATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATTATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAA
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854