Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M666_RS03595 Genome accession   NZ_CP009976
Coordinates   872679..874040 (+) Length   453 a.a.
NCBI ID   WP_025616507.1    Uniprot ID   A0AAU8RYR6
Organism   Cellulophaga baltica 18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867679..879040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M666_RS03570 (M666_03570) panC 868284..869129 (+) 846 WP_029447723.1 pantoate--beta-alanine ligase -
  M666_RS03575 (M666_03575) panD 869147..869497 (+) 351 WP_024482662.1 aspartate 1-decarboxylase -
  M666_RS03580 (M666_03580) - 869502..870467 (+) 966 WP_029447722.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  M666_RS03585 (M666_03585) - 870492..871634 (+) 1143 WP_029447721.1 alpha/beta hydrolase -
  M666_RS03590 (M666_03590) - 871700..872095 (+) 396 WP_029447720.1 hypothetical protein -
  M666_RS03595 (M666_03595) radA 872679..874040 (+) 1362 WP_025616507.1 DNA repair protein RadA Machinery gene
  M666_RS03600 (M666_03600) - 874042..875082 (-) 1041 WP_029447719.1 aldo/keto reductase -
  M666_RS03605 (M666_03605) - 875159..875920 (-) 762 WP_029447718.1 exodeoxyribonuclease III -
  M666_RS03610 (M666_03610) - 876089..876607 (+) 519 WP_029447717.1 hypothetical protein -
  M666_RS03615 (M666_03615) - 876740..877783 (+) 1044 WP_029447716.1 OmpA family protein -
  M666_RS03620 (M666_03620) - 877968..878357 (+) 390 WP_029447715.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49805.18 Da        Isoelectric Point: 6.3721

>NTDB_id=133298 M666_RS03595 WP_025616507.1 872679..874040(+) (radA) [Cellulophaga baltica 18]
MAKTKTAFFCQNCGTQYAKWVGQCTACKEWNTVVEEVVQKEEKSSWKTPTNTTKKVSKPLRVNEISTEKELRLNTFDLEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPNSDTCFILTETKTQNIFKQI
EDTEPDIVVIDSIQTLHSDHIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDSVLQFEGD
RNYVYRILRSLKNRFGSTSELGIYEMQGSGLREVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIAIEKGVCFAAEVGLAGEI
RPVQRVEQRITEAEKLGFDTIFVSKNNKISLKNTQINIQLVAKIEDVANYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=133298 M666_RS03595 WP_025616507.1 872679..874040(+) (radA) [Cellulophaga baltica 18]
ATGGCTAAAACAAAAACAGCTTTTTTTTGTCAGAATTGCGGCACACAATATGCTAAATGGGTAGGACAATGTACCGCCTG
TAAAGAATGGAATACCGTTGTTGAAGAAGTAGTCCAAAAAGAAGAAAAATCTAGCTGGAAGACTCCGACAAATACCACTA
AGAAAGTTTCCAAGCCTTTACGAGTTAACGAAATTAGCACGGAGAAAGAATTACGATTAAATACATTTGACCTAGAGTTT
AATCGTGTTTTAGGCGGCGGTCTTGTTCCTGGCTCTTTGACACTTTTAGGTGGTGAACCTGGCATAGGAAAGAGTACATT
ACTACTCCAAATTGCCTTAAAACTACCTTATAAAACGCTATACGTATCTGGAGAAGAGAGTCAGAAGCAAATAAAAATGC
GTGCAGACCGTATTCACCCCAATAGCGATACTTGCTTTATTCTTACAGAAACAAAAACTCAAAATATCTTTAAGCAGATA
GAAGATACCGAGCCTGATATTGTGGTAATTGATTCCATACAGACGCTACATTCTGATCATATTGAATCTGCCGCCGGAAG
TATTTCTCAAATTAGAGAATGTACTGCAGAGCTTATTAAATTTGCTAAAGAAACCAATACTCCCGTGATCTTAATTGGCC
ATATTACCAAAGATGGTTCTATTGCCGGTCCAAAAATTTTAGAACACATGGTAGATAGTGTGCTTCAATTTGAAGGCGAT
CGGAATTATGTATACCGCATTTTACGCTCCTTAAAAAATAGGTTTGGCTCTACCTCTGAACTGGGAATTTATGAAATGCA
AGGCAGTGGTTTGCGTGAAGTGAACAATCCGTCTGAAATTCTAATTTCTAAAAATGACGAAGGCTTAAGTGGTACCGCAA
TAGCATCTACTGTAGAAGGCATGCGCCCTCTTATGATAGAAATACAAGCTTTGGTAAGTACTGCTGTTTACGGTACACCT
CAACGTTCTACAACGGGTTATAATGCCAAACGTTTAAACATGCTTTTGGCTGTATTAGAAAAGCGTGCTGGATTTAAATT
AGCCGCAAAAGATGTATTCTTAAACATTACTGGAGGTATTTCCGTAGATGATCCTGCCATCGATTTGGCCGTAATTGCCG
CTATACTTTCCAGCAATGAAGATATTGCCATAGAAAAAGGTGTATGTTTTGCTGCCGAAGTTGGATTAGCTGGCGAAATA
CGCCCTGTACAACGCGTAGAACAACGAATCACGGAAGCCGAAAAATTAGGATTTGACACTATTTTCGTTTCCAAAAACAA
TAAAATCAGTCTAAAAAATACACAGATAAACATTCAACTTGTAGCAAAAATTGAAGATGTAGCCAACTATTTATTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.807

100

0.481
  radA Streptococcus pneumoniae Rx1

47.807

100

0.481
  radA Streptococcus pneumoniae R6

47.807

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.481
  radA Streptococcus mitis SK321

47.473

100

0.477
  radA Streptococcus mitis NCTC 12261

47.473

100

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475

Multiple sequence alignment