Detailed information NTG0133285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AKO64_RS16040
• Genome accession: NZ_CP012380
• Coordinates: 3067815..3068807 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WAT
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3062815..3073807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AKO64_RS16015 (AKO64_3037)	ygbN	3063470..3064834 (+)	1365	WP_000104439.1	GntP family transporter	-
AKO64_RS16020 (AKO64_3038)	-	3064873..3065109 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AKO64_RS16025 (AKO64_3039)	-	3065120..3066547 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AKO64_RS16030 (AKO64_3040)	-	3066547..3067140 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AKO64_RS16035 (AKO64_3041)	-	3067287..3067694 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
AKO64_RS16040 (AKO64_3042)	rpoS	3067815..3068807 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AKO64_RS16045 (AKO64_3043)	nlpD	3068870..3069964 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AKO64_RS16050 (AKO64_3044)	pcm	3070149..3070775 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AKO64_RS16055 (AKO64_3045)	surE	3070769..3071530 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AKO64_RS16060 (AKO64_3046)	truD	3071511..3072560 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AKO64_RS16065 (AKO64_3047)	ispF	3072557..3073036 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AKO64_RS16070 (AKO64_3048)	ispD	3073036..3073746 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=133285 AKO64_RS16040 WP_000081550.1 3067815..3068807(-) (rpoS) [Escherichia coli strain WAT]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=133285 AKO64_RS16040 WP_000081550.1 3067815..3068807(-) (rpoS) [Escherichia coli strain WAT]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715