Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AKO64_RS15740 Genome accession   NZ_CP012380
Coordinates   3012179..3012694 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WAT     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007179..3017694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO64_RS15715 (AKO64_2974) ygaZ 3007578..3008315 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AKO64_RS15720 (AKO64_2975) ygaH 3008305..3008640 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AKO64_RS15725 (AKO64_2976) emrR 3008731..3009261 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AKO64_RS15730 (AKO64_2978) emrA 3009388..3010560 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AKO64_RS15735 (AKO64_2979) emrB 3010577..3012115 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AKO64_RS15740 (AKO64_2980) luxS 3012179..3012694 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AKO64_RS15745 (AKO64_2981) gshA 3012844..3014400 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AKO64_RS15750 (AKO64_2982) yqaA 3014473..3014901 (-) 429 WP_001287457.1 YqaA family protein -
  AKO64_RS15755 (AKO64_2983) yqaB 3014898..3015464 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AKO64_RS15785 (AKO64_2989) csrA 3017057..3017242 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=133282 AKO64_RS15740 WP_001130211.1 3012179..3012694(-) (luxS) [Escherichia coli strain WAT]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=133282 AKO64_RS15740 WP_001130211.1 3012179..3012694(-) (luxS) [Escherichia coli strain WAT]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731