Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BF28_RS24410 Genome accession   NZ_CP009968
Coordinates   4185807..4186130 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus E33L     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4180807..4191130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF28_RS24395 (BF28_4322) - 4181320..4182687 (-) 1368 WP_000116808.1 aldehyde dehydrogenase -
  BF28_RS24400 (BF28_4323) inhA1 4182859..4185249 (-) 2391 WP_001035917.1 M6 family metalloprotease immune inhibitor InhA1 -
  BF28_RS24405 - 4185593..4185727 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  BF28_RS24410 (BF28_4324) sinR 4185807..4186130 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  BF28_RS24415 (BF28_4325) calY 4186204..4186797 (-) 594 WP_000053731.1 biofilm matrix protein CalY -
  BF28_RS24420 (BF28_4326) - 4187222..4187992 (-) 771 WP_000917479.1 DUF4047 domain-containing protein -
  BF28_RS24425 (BF28_4327) - 4188154..4188741 (-) 588 WP_000172840.1 CalY family protein -
  BF28_RS24430 (BF28_4328) sipW 4188802..4189371 (-) 570 WP_000767813.1 signal peptidase I SipW -
  BF28_RS24435 (BF28_4329) - 4189563..4190849 (-) 1287 WP_000247002.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=133241 BF28_RS24410 WP_000578878.1 4185807..4186130(+) (sinR) [Bacillus cereus E33L]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=133241 BF28_RS24410 WP_000578878.1 4185807..4186130(+) (sinR) [Bacillus cereus E33L]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment