Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BF28_RS23040 Genome accession   NZ_CP009968
Coordinates   3941787..3942389 (+) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus cereus E33L     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3936787..3947389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF28_RS23000 (BF28_4050) gpsB 3937168..3937506 (-) 339 WP_000622433.1 cell division regulator GpsB -
  BF28_RS23005 (BF28_4051) - 3937604..3938158 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  BF28_RS23010 (BF28_4052) - 3938215..3938640 (-) 426 WP_000546265.1 CotD family spore coat protein -
  BF28_RS23015 (BF28_4053) - 3938796..3939275 (-) 480 WP_000487699.1 YppG family protein -
  BF28_RS23020 (BF28_4054) - 3939453..3939644 (+) 192 WP_000242663.1 YppF family protein -
  BF28_RS23025 (BF28_4055) - 3939670..3940014 (-) 345 WP_000872959.1 YppE family protein -
  BF28_RS23030 (BF28_4056) - 3940030..3940272 (-) 243 WP_001252043.1 hypothetical protein -
  BF28_RS33175 - 3940358..3940534 (+) 177 WP_001982922.1 hypothetical protein -
  BF28_RS23035 (BF28_4058) - 3940658..3941683 (-) 1026 WP_000495643.1 DUF2515 domain-containing protein -
  BF28_RS23040 (BF28_4059) recU 3941787..3942389 (+) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  BF28_RS23045 (BF28_4060) - 3942455..3945148 (+) 2694 WP_001283125.1 PBP1A family penicillin-binding protein -
  BF28_RS23050 (BF28_4061) - 3945172..3945690 (-) 519 WP_000442681.1 YpoC family protein -
  BF28_RS23055 (BF28_4062) nth 3945694..3946341 (-) 648 WP_000933025.1 endonuclease III -
  BF28_RS23060 (BF28_4063) dnaD 3946357..3947064 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=133239 BF28_RS23040 WP_000155594.1 3941787..3942389(+) (recU) [Bacillus cereus E33L]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=133239 BF28_RS23040 WP_000155594.1 3941787..3942389(+) (recU) [Bacillus cereus E33L]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACCTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCGTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment