Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BF28_RS03260 Genome accession   NZ_CP009968
Coordinates   120185..120469 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus E33L     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 115185..125469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF28_RS03245 (BF28_146) rnmV 116008..116565 (-) 558 WP_000692830.1 ribonuclease M5 -
  BF28_RS03250 (BF28_147) - 116779..117546 (-) 768 WP_000895820.1 TatD family hydrolase -
  BF28_RS03255 (BF28_148) metG 117712..119694 (-) 1983 WP_000134152.1 methionine--tRNA ligase -
  BF28_RS03260 (BF28_149) abrB 120185..120469 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BF28_RS03265 (BF28_150) rsmI 120490..121365 (-) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BF28_RS03270 (BF28_151) - 121334..121624 (-) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  BF28_RS03275 (BF28_152) - 121611..122351 (-) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BF28_RS03280 (BF28_153) yabA 122472..122822 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BF28_RS03285 (BF28_154) - 122837..123664 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  BF28_RS03290 (BF28_155) holB 123670..124653 (-) 984 WP_000169575.1 DNA polymerase III subunit delta' -
  BF28_RS03295 (BF28_156) tmk 124689..125315 (-) 627 WP_000677237.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=133208 BF28_RS03260 WP_000843036.1 120185..120469(+) (abrB) [Bacillus cereus E33L]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=133208 BF28_RS03260 WP_000843036.1 120185..120469(+) (abrB) [Bacillus cereus E33L]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATTATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment