Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AKO63_RS16380 Genome accession   NZ_CP012379
Coordinates   3200934..3201410 (+) Length   158 a.a.
NCBI ID   WP_149506776.1    Uniprot ID   -
Organism   Escherichia coli strain PAR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3195934..3206410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO63_RS16350 (AKO63_3160) - 3196101..3198617 (+) 2517 WP_001348608.1 hypothetical protein -
  AKO63_RS16355 (AKO63_3161) - 3198693..3199148 (+) 456 WP_073533319.1 IrmA family protein -
  AKO63_RS16360 - 3199227..3199460 (+) 234 WP_073533318.1 DUF905 family protein -
  AKO63_RS16370 (AKO63_3163) - 3199560..3200378 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  AKO63_RS16375 (AKO63_3164) - 3200433..3200918 (+) 486 WP_029701480.1 antirestriction protein -
  AKO63_RS16380 (AKO63_3165) radC 3200934..3201410 (+) 477 WP_149506776.1 RadC family protein Machinery gene
  AKO63_RS16385 (AKO63_3167) yeeT 3201473..3201694 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  AKO63_RS16395 (AKO63_3169) cbeA 3201857..3202225 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AKO63_RS16400 (AKO63_3170) - 3202315..3202692 (+) 378 WP_073533316.1 TA system toxin CbtA family protein -
  AKO63_RS16405 (AKO63_3171) - 3202689..3203177 (+) 489 WP_073533309.1 DUF5983 family protein -
  AKO63_RS16410 - 3203189..3203386 (+) 198 Protein_3042 hypothetical protein -
  AKO63_RS16415 (AKO63_3172) - 3203471..3204313 (+) 843 WP_073533308.1 DUF4942 domain-containing protein -
  AKO63_RS16420 (AKO63_3173) - 3204717..3204938 (+) 222 Protein_3044 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17664.33 Da        Isoelectric Point: 7.2020

>NTDB_id=133205 AKO63_RS16380 WP_149506776.1 3200934..3201410(+) (radC) [Escherichia coli strain PAR]
MQQLSFLPGEMTPGERSLILRAMKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=133205 AKO63_RS16380 WP_149506776.1 3200934..3201410(+) (radC) [Escherichia coli strain PAR]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCATGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACATCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399