Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LT85_RS10895 Genome accession   NZ_CP009962
Coordinates   2429813..2431183 (+) Length   456 a.a.
NCBI ID   WP_038488484.1    Uniprot ID   -
Organism   Collimonas arenae strain Cal35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2424813..2436183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS10875 (LT85_2193) - 2425163..2426152 (+) 990 WP_253273713.1 DUF1853 family protein -
  LT85_RS10880 (LT85_2194) - 2426277..2427095 (+) 819 WP_038488475.1 hypothetical protein -
  LT85_RS10885 (LT85_2195) lplT 2427184..2428446 (-) 1263 WP_038488478.1 lysophospholipid transporter LplT -
  LT85_RS10890 (LT85_2196) alr 2428635..2429711 (+) 1077 WP_038488481.1 alanine racemase -
  LT85_RS10895 (LT85_2197) radA 2429813..2431183 (+) 1371 WP_038488484.1 DNA repair protein RadA Machinery gene
  LT85_RS10900 (LT85_2198) - 2431293..2432399 (+) 1107 WP_038488487.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  LT85_RS10905 (LT85_2199) fghA 2432401..2433249 (+) 849 WP_038488491.1 S-formylglutathione hydrolase -
  LT85_RS10910 (LT85_2200) - 2433326..2434024 (-) 699 WP_052135058.1 TerC family protein -
  LT85_RS10915 (LT85_2201) - 2434370..2435275 (-) 906 WP_038488494.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48588.06 Da        Isoelectric Point: 7.4345

>NTDB_id=133196 LT85_RS10895 WP_038488484.1 2429813..2431183(+) (radA) [Collimonas arenae strain Cal35]
MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETIVEAVGNRFSNQHQGLAQAAPVMTLADIDAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKKVLYVSGEESGAQIALRAKRLVVDARDLKFQAEIQLEKIINT
LVDHKPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKSNAPKQDIEGLKVISVERIDDALSKIRDAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=133196 LT85_RS10895 WP_038488484.1 2429813..2431183(+) (radA) [Collimonas arenae strain Cal35]
ATGGCCAAAGCTAAAACCAATTACACCTGTACCGAATGTGGCGGCGTCGCCAATAAATGGACCGGCCAGTGCCCGTCGTG
CGGGCAATGGAACACCTTGGTGGAAACCATTGTAGAGGCTGTTGGCAACCGTTTTTCAAATCAGCATCAGGGCCTGGCGC
AAGCCGCGCCGGTAATGACGTTGGCCGATATTGACGCCATTGACGTGCCGCGTTTCGGCACCGGCATCGAGGAGTTCGAC
CGGGTGCTGGGTGGCGGTTTGGTTGCTGGCGGCGTGGTGTTGATCGGCGGCGATCCGGGGATCGGTAAGTCGACCTTGCT
ATTGCAGGCGCTGGCGAATCTGTCGAAGATCAAAAAAGTCCTGTATGTCAGCGGTGAAGAGTCGGGTGCGCAAATCGCAT
TGCGCGCCAAGCGACTGGTGGTGGATGCCAGGGATCTCAAGTTCCAGGCTGAAATCCAGCTTGAAAAAATCATCAACACG
CTGGTGGATCACAAGCCGGACGTGGCGGTCATCGATTCAATCCAGACGGTCTATTCCGATGCGCTCAGTTCGGCCCCTGG
ATCGGTAGCGCAGGTGCGTGAATGTGCGGCGCAGCTGACGCGTATCGCGAAGCAATCCGGCATTACTATCATCATGGTCG
GCCACGTCACCAAAGAGGGCGCGCTGGCCGGTCCGCGCGTGCTGGAACATATCGTCGATACCGTGTTGTACTTCGAAGGC
GATACCCACTCCAGTTTCCGCCTTGTACGAGCGATCAAGAACCGTTTTGGCGCAGTCAATGAACTCGGCGTTTTCGCGAT
GACTGAAAAAGGCTTGAAAGGCGTATCCAATCCTTCCGCTTTGTTTCTGTCGCAGCACGATAACCAGGTGCCGGGTTCTT
GCGTGATGGTGACGCAAGAGGGAACACGTCCTTTGCTGGTTGAGATTCAAGCCTTGGTCGACGCCTCGCACGTGCCGAAC
GCGCGCCGCTTGTCAGTCGGTTTGGAGCAGAACCGTTTGGCGATGTTGCTGGCGGTGCTGCATCGCCATGCAGGCATCGC
AGCGTTTGATCAAGACGTATTCATAAACGCGGTGGGGGGCGTCAAGATCACCGAACCGGCCGCCGATCTGGCAGTGTTGC
TGGCGATTAATTCGTCGATGCGCAACCGGCCGTTGCCGCGTGGACTGGTGGTGTTTGGCGAAGTCGGCCTGGCCGGAGAA
ATCCGCCCTGCGCCGCGCGGCCAGGAGCGCTTGCGGGAAGCGGCCAAGCTGGGATTTTCGATCGCCATGATCCCGAAATC
GAATGCCCCGAAACAAGATATTGAAGGTTTGAAAGTGATCTCGGTGGAACGCATCGATGACGCTTTGAGCAAAATACGCG
ACGCTGAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.491
  radA Streptococcus pneumoniae Rx1

47.265

100

0.474
  radA Streptococcus pneumoniae D39

47.265

100

0.474
  radA Streptococcus pneumoniae R6

47.265

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.265

100

0.474
  radA Streptococcus mitis NCTC 12261

47.368

100

0.474
  radA Streptococcus mitis SK321

47.368

100

0.474

Multiple sequence alignment