Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LT85_RS04415 Genome accession   NZ_CP009962
Coordinates   983120..983548 (+) Length   142 a.a.
NCBI ID   WP_038485763.1    Uniprot ID   A0A0A1F8N3
Organism   Collimonas arenae strain Cal35     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 978120..988548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS04390 (LT85_0869) mtgA 978425..979117 (+) 693 WP_038485754.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LT85_RS04395 (LT85_0870) corA 979394..980359 (+) 966 WP_038485757.1 magnesium/cobalt transporter CorA -
  LT85_RS04400 (LT85_0871) hemL 980398..981681 (-) 1284 WP_038495020.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LT85_RS04405 (LT85_0872) - 981842..982696 (-) 855 WP_038485760.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  LT85_RS04410 (LT85_0873) - 982804..982956 (+) 153 WP_038495022.1 rubredoxin -
  LT85_RS04415 (LT85_0874) pilG 983120..983548 (+) 429 WP_038485763.1 PleD family two-component system response regulator Regulator
  LT85_RS04420 (LT85_0875) - 983635..984000 (+) 366 WP_038485766.1 PleD family two-component system response regulator -
  LT85_RS04425 (LT85_0876) - 984064..984669 (+) 606 WP_038485769.1 chemotaxis protein CheW -
  LT85_RS04430 (LT85_0877) - 984798..987197 (+) 2400 WP_038485772.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15277.66 Da        Isoelectric Point: 7.8793

>NTDB_id=133192 LT85_RS04415 WP_038485763.1 983120..983548(+) (pilG) [Collimonas arenae strain Cal35]
MTTSLGGVNLKVMVIDDSSTIRRSAEIFLSQAGYQVVLAEDGFDALAKVNDHKPALIFCDILMPRLDGYQTCALIKKSAK
FHATPVVMLSSKDGLFDRARGAMVGSDEYLTKPFTKDSLLKAVRQHTQAADGAVQSVVAVTA

Nucleotide


Download         Length: 429 bp        

>NTDB_id=133192 LT85_RS04415 WP_038485763.1 983120..983548(+) (pilG) [Collimonas arenae strain Cal35]
ATGACAACATCACTTGGCGGCGTCAACCTGAAGGTAATGGTGATTGACGATAGCAGCACGATTCGTCGTTCTGCGGAGAT
TTTCCTTAGCCAGGCCGGCTATCAGGTGGTACTTGCCGAAGATGGCTTCGATGCATTGGCGAAAGTCAATGATCACAAGC
CCGCGTTGATTTTTTGCGACATCCTGATGCCTCGTCTGGATGGCTATCAAACCTGTGCTCTGATTAAAAAGAGCGCTAAA
TTCCATGCTACGCCGGTGGTCATGCTGTCGTCCAAGGACGGCCTGTTTGATCGTGCGCGCGGCGCTATGGTCGGCTCCGA
CGAATATCTCACCAAACCGTTCACCAAAGACAGTCTGCTGAAGGCGGTGCGCCAGCATACCCAGGCTGCGGACGGTGCTG
TCCAAAGCGTCGTAGCGGTAACGGCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1F8N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.636

85.211

0.542

Multiple sequence alignment